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- TD-1_RNA_motif abstract "The TD-1 RNA motif is a conserved RNA structure found only in the species Treponema denticola, at least among bacteria whose genomes were sequenced in 2007 when the RNA motif was identified. The T. denticola genome contains 28 predicted TD-1 RNAs, and all but two of these are positioned such that they are likely to be in the 5' UTR of the downstream gene. This arrangement suggests that TD-1 RNAs likely correspond to cis-regulatory elements. However, due to the variety of genes apparently regulated by TD-1 RNAs, no specific hypothesis as to its function was suggested.The TD-1 RNA's secondary structure is supported by covariation (see secondary structure prediction), but there are an unusual number of stems containing runs of adenosines that base pair with coordinate runs of uridines.Seven TD-1 RNAs overlap predicted representatives of the TD-2 RNA motif, but it is unknown whether these two motifs can somehow be merged.".
- TD-1_RNA_motif wikiPageID "19189340".
- TD-1_RNA_motif wikiPageLength "1466".
- TD-1_RNA_motif wikiPageOutDegree "14".
- TD-1_RNA_motif wikiPageRevisionID "679092010".
- TD-1_RNA_motif wikiPageWikiLink Adenosine.
- TD-1_RNA_motif wikiPageWikiLink Bacteria.
- TD-1_RNA_motif wikiPageWikiLink Base_pair.
- TD-1_RNA_motif wikiPageWikiLink Category:Cis-regulatory_RNA_elements.
- TD-1_RNA_motif wikiPageWikiLink Cis-Regulatory_element.
- TD-1_RNA_motif wikiPageWikiLink Five_prime_untranslated_region.
- TD-1_RNA_motif wikiPageWikiLink Gene.
- TD-1_RNA_motif wikiPageWikiLink Genome.
- TD-1_RNA_motif wikiPageWikiLink Nucleic_acid_structure_prediction.
- TD-1_RNA_motif wikiPageWikiLink RNA.
- TD-1_RNA_motif wikiPageWikiLink TD-2_RNA_motif.
- TD-1_RNA_motif wikiPageWikiLink Treponema_denticola.
- TD-1_RNA_motif wikiPageWikiLink Uridine.
- TD-1_RNA_motif wikiPageWikiLinkText "TD-1 RNA motif".
- TD-1_RNA_motif wikiPageUsesTemplate Template:Molecular-cell-biology-stub.
- TD-1_RNA_motif subject Category:Cis-regulatory_RNA_elements.
- TD-1_RNA_motif hypernym Structure.
- TD-1_RNA_motif type Building.
- TD-1_RNA_motif type Element.
- TD-1_RNA_motif comment "The TD-1 RNA motif is a conserved RNA structure found only in the species Treponema denticola, at least among bacteria whose genomes were sequenced in 2007 when the RNA motif was identified. The T. denticola genome contains 28 predicted TD-1 RNAs, and all but two of these are positioned such that they are likely to be in the 5' UTR of the downstream gene. This arrangement suggests that TD-1 RNAs likely correspond to cis-regulatory elements.".
- TD-1_RNA_motif label "TD-1 RNA motif".
- TD-1_RNA_motif sameAs Q7669822.
- TD-1_RNA_motif sameAs m.04lgg5g.
- TD-1_RNA_motif sameAs Q7669822.
- TD-1_RNA_motif wasDerivedFrom TD-1_RNA_motif?oldid=679092010.
- TD-1_RNA_motif isPrimaryTopicOf TD-1_RNA_motif.