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- SuperPose abstract "SuperPose is a freely available web server designed to perform both pairwise and multiple protein structure superpositions. The “Structural superposition” term refers to the rotations and translations performed on one structure to make it match or align with another structure or structures. Structural superposition can be quantified either in terms of similarity or difference measures. The optimal superposition is the one in which the similarity measure is maximized (the former case) or the difference measure (the later case) is minimized. The “SuperPose” web server uses “RMSD” or Root-Mean-Square Deviation as a difference measure to find the optimal pairwise or multiple protein structure superposition. After an initial sequence and secondary structure (in case of low sequence identity) alignment, SuperPose generates a Difference Distance (DD) matrix from the equivalent C-alpha atoms of two molecules. The sequence/structure alignment and DD matrix analysis information is then fed into a modified quaternion eigenvalue algorithm to rapidly perform the structural superposition and calculate the RMSD between aligned regions of two macromolecules.".
- SuperPose thumbnail SuperPose.png?width=300.
- SuperPose title "SuperPose".
- SuperPose wikiPageExternalLink SuperPose.
- SuperPose wikiPageExternalLink SuperPose.
- SuperPose wikiPageID "42879159".
- SuperPose wikiPageLength "5845".
- SuperPose wikiPageOutDegree "22".
- SuperPose wikiPageRevisionID "620855334".
- SuperPose wikiPageWikiLink Biomolecular_structure.
- SuperPose wikiPageWikiLink Nuclear_magnetic_resonance.
- SuperPose wikiPageWikiLink Protein_Data_Bank.
- SuperPose wikiPageWikiLink Protein_structure.
- SuperPose wikiPageWikiLink Quaternion.
- SuperPose wikiPageWikiLink Root-mean-square_deviation.
- SuperPose wikiPageWikiLink Sequence_alignment.
- SuperPose wikiPageWikiLink Structural_alignment.
- SuperPose wikiPageWikiLink File:SuperPose.png.
- SuperPose wikiPageWikiLink File:SuperPose2.png.
- SuperPose wikiPageWikiLink File:SuperPose3.png.
- SuperPose wikiPageWikiLink File:SuperPose4.png.
- SuperPose wikiPageWikiLink File:SuperPose5.png.
- SuperPose wikiPageWikiLinkText "SuperPose".
- SuperPose center "University of Alberta".
- SuperPose description "For protein structure superposition".
- SuperPose format "Data input: PDB files of two structures to be superimposed. Data output: Sequence alignments, structure alignments, PDB coordinates and RMSD statistics, as well as difference distance plots and images of the superimposed molecules.".
- SuperPose laboratory "Dr. David Wishart".
- SuperPose released "2004".
- SuperPose title "SuperPose".
- SuperPose url SuperPose.
- SuperPose wikiPageUsesTemplate Template:Infobox_biodatabase.
- SuperPose wikiPageUsesTemplate Template:Orphan.
- SuperPose wikiPageUsesTemplate Template:Reflist.
- SuperPose description "For protein structure superposition".
- SuperPose type BiologicalDatabase.
- SuperPose type Database.
- SuperPose type Work.
- SuperPose type CreativeWork.
- SuperPose type InformationObject.
- SuperPose type Thing.
- SuperPose type Q386724.
- SuperPose comment "SuperPose is a freely available web server designed to perform both pairwise and multiple protein structure superpositions. The “Structural superposition” term refers to the rotations and translations performed on one structure to make it match or align with another structure or structures. Structural superposition can be quantified either in terms of similarity or difference measures.".
- SuperPose label "SuperPose".
- SuperPose sameAs Q18386417.
- SuperPose sameAs m.010qrm66.
- SuperPose sameAs Q18386417.
- SuperPose wasDerivedFrom SuperPose?oldid=620855334.
- SuperPose depiction SuperPose.png.
- SuperPose homepage SuperPose.
- SuperPose isPrimaryTopicOf SuperPose.