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Matches in DBpedia 2016-04 for { <http://dbpedia.org/resource/Structural_alignment> ?p ?o }

• Structural_alignment abstract "Structural alignment attempts to establish homology between two or more polymer structures based on their shape and three-dimensional conformation. This process is usually applied to protein tertiary structures but can also be used for large RNA molecules. In contrast to simple structural superposition, where at least some equivalent residues of the two structures are known, structural alignment requires no a priori knowledge of equivalent positions. Structural alignment is a valuable tool for the comparison of proteins with low sequence similarity, where evolutionary relationships between proteins cannot be easily detected by standard sequence alignment techniques. Structural alignment can therefore be used to imply evolutionary relationships between proteins that share very little common sequence. However, caution should be used in using the results as evidence for shared evolutionary ancestry because of the possible confounding effects of convergent evolution by which multiple unrelated amino acid sequences converge on a common tertiary structure.Structural alignments can compare two sequences or multiple sequences. Because these alignments rely on information about all the query sequences' three-dimensional conformations, the method can only be used on sequences where these structures are known. These are usually found by X-ray crystallography or NMR spectroscopy. It is possible to perform a structural alignment on structures produced by structure prediction methods. Indeed, evaluating such predictions often requires a structural alignment between the model and the true known structure to assess the model's quality. Structural alignments are especially useful in analyzing data from structural genomics and proteomics efforts, and they can be used as comparison points to evaluate alignments produced by purely sequence-based bioinformatics methods.The outputs of a structural alignment are a superposition of the atomic coordinate sets and a minimal root mean square deviation (RMSD) between the structures. The RMSD of two aligned structures indicates their divergence from one another. Structural alignment can be complicated by the existence of multiple protein domains within one or more of the input structures, because changes in relative orientation of the domains between two structures to be aligned can artificially inflate the RMSD.".
• Structural_alignment thumbnail Alignment_of_thioredoxins2.png?width=300.
• Structural_alignment wikiPageExternalLink 2362.
• Structural_alignment wikiPageExternalLink 426?ijkey=oWkOpf10zxhKaF2&keytype=ref.
• Structural_alignment wikiPageExternalLink cl.sdsc.edu.
• Structural_alignment wikiPageExternalLink start.
• Structural_alignment wikiPageExternalLink download.html.
• Structural_alignment wikiPageExternalLink start.
• Structural_alignment wikiPageExternalLink foldalign.kvl.dk.
• Structural_alignment wikiPageExternalLink Structural_alignment_tools.
• Structural_alignment wikiPageExternalLink setter.
• Structural_alignment wikiPageExternalLink SuperPose.
• Structural_alignment wikiPageExternalLink index.html.
• Structural_alignment wikiPageExternalLink explore.do?structureId=1XWC.
• Structural_alignment wikiPageExternalLink explore.do?structureId=3TRX.
• Structural_alignment wikiPageExternalLink workbench.do.
• Structural_alignment wikiPageID "474908".
• Structural_alignment wikiPageLength "31404".
• Structural_alignment wikiPageOutDegree "79".
• Structural_alignment wikiPageRevisionID "704934005".
• Structural_alignment wikiPageWikiLink Alpha_and_beta_carbon.
• Structural_alignment wikiPageWikiLink Amino_acid.
• Structural_alignment wikiPageWikiLink Base_pair.
• Structural_alignment wikiPageWikiLink Bioinformatics.
• Structural_alignment wikiPageWikiLink Biomolecular_structure.
• Structural_alignment wikiPageWikiLink CASP.
• Structural_alignment wikiPageWikiLink CATH_database.
• Structural_alignment wikiPageWikiLink Category:Protein_methods.
• Structural_alignment wikiPageWikiLink Circular_permutation_in_proteins.
• Structural_alignment wikiPageWikiLink Conformational_isomerism.
• Structural_alignment wikiPageWikiLink Convergent_evolution.
• Structural_alignment wikiPageWikiLink Coordinate_system.
• Structural_alignment wikiPageWikiLink Dihedral_angle.
• Structural_alignment wikiPageWikiLink Distance_matrix.
• Structural_alignment wikiPageWikiLink Dynamic_programming.
• Structural_alignment wikiPageWikiLink Euclidean_vector.
• Structural_alignment wikiPageWikiLink Evolution.
• Structural_alignment wikiPageWikiLink Families_of_structurally_similar_proteins.
• Structural_alignment wikiPageWikiLink Genomics.
• Structural_alignment wikiPageWikiLink Global_distance_test.
• Structural_alignment wikiPageWikiLink Helix_bundle.
• Structural_alignment wikiPageWikiLink Hydrogen_bond.
• Structural_alignment wikiPageWikiLink List_of_sequence_alignment_software.
• Structural_alignment wikiPageWikiLink Macromolecule.
• Structural_alignment wikiPageWikiLink Main_diagonal.
• Structural_alignment wikiPageWikiLink Matrix_(mathematics).
• Structural_alignment wikiPageWikiLink Monte_Carlo_method.
• Structural_alignment wikiPageWikiLink Multiple_sequence_alignment.
• Structural_alignment wikiPageWikiLink NP-completeness.
• Structural_alignment wikiPageWikiLink Native_contact.
• Structural_alignment wikiPageWikiLink Noise_(electronics).
• Structural_alignment wikiPageWikiLink Non-coding_RNA.
• Structural_alignment wikiPageWikiLink Nuclear_magnetic_resonance_spectroscopy.
• Structural_alignment wikiPageWikiLink Nucleic_acid_structure.
• Structural_alignment wikiPageWikiLink Nucleic_acid_tertiary_structure.
• Structural_alignment wikiPageWikiLink Nucleotide.
• Structural_alignment wikiPageWikiLink Peptide_bond.
• Structural_alignment wikiPageWikiLink Plane_(geometry).
• Structural_alignment wikiPageWikiLink Polymer.
• Structural_alignment wikiPageWikiLink Protein.
• Structural_alignment wikiPageWikiLink Protein_Data_Bank.
• Structural_alignment wikiPageWikiLink Protein_domain.
• Structural_alignment wikiPageWikiLink Protein_folding.
• Structural_alignment wikiPageWikiLink Protein_structure_prediction.
• Structural_alignment wikiPageWikiLink Proteomics.
• Structural_alignment wikiPageWikiLink Pseudoknot.
• Structural_alignment wikiPageWikiLink Quaternion.
• Structural_alignment wikiPageWikiLink RNA.
• Structural_alignment wikiPageWikiLink Root-mean-square_deviation_of_atomic_positions.
• Structural_alignment wikiPageWikiLink Root_mean_square.
• Structural_alignment wikiPageWikiLink Self-information.
• Structural_alignment wikiPageWikiLink Sequence_alignment.
• Structural_alignment wikiPageWikiLink Side_chain.
• Structural_alignment wikiPageWikiLink Structural_Classification_of_Proteins_database.
• Structural_alignment wikiPageWikiLink Structural_alignment_software.
• Structural_alignment wikiPageWikiLink Structural_genomics.
• Structural_alignment wikiPageWikiLink SuperPose.
• Structural_alignment wikiPageWikiLink Thermodynamic_free_energy.
• Structural_alignment wikiPageWikiLink Threading_(protein_sequence).
• Structural_alignment wikiPageWikiLink Time_complexity.
• Structural_alignment wikiPageWikiLink X-ray_crystallography.
• Structural_alignment wikiPageWikiLink File:Alignment_of_thioredoxins2.png.
• Structural_alignment wikiPageWikiLink File:Ssap-vectors.png.
• Structural_alignment wikiPageWikiLinkText "CE".
• Structural_alignment wikiPageWikiLinkText "CE-MC".
• Structural_alignment wikiPageWikiLinkText "Combinatorial Extension".
• Structural_alignment wikiPageWikiLinkText "DALI".
• Structural_alignment wikiPageWikiLinkText "DaliLite".
• Structural_alignment wikiPageWikiLinkText "GANGSTA+".
• Structural_alignment wikiPageWikiLinkText "MAMMOTH".
• Structural_alignment wikiPageWikiLinkText "MAMMOTH-mult".
• Structural_alignment wikiPageWikiLinkText "Protein structure comparison".
• Structural_alignment wikiPageWikiLinkText "SA".
• Structural_alignment wikiPageWikiLinkText "SABERTOOTH".
• Structural_alignment wikiPageWikiLinkText "SPalign".
• Structural_alignment wikiPageWikiLinkText "SSAP".
• Structural_alignment wikiPageWikiLinkText "Structural Alignment".
• Structural_alignment wikiPageWikiLinkText "Structural alignment".
• Structural_alignment wikiPageWikiLinkText "Structural superposition".
• Structural_alignment wikiPageWikiLinkText "Structure-based sequence".

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