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- Sequence_clustering abstract "In bioinformatics, sequence clustering algorithms attempt to group biological sequences that are somehow related. The sequences can be either of genomic, \"transcriptomic\" (ESTs) or protein origin.For proteins, homologous sequences are typically grouped into families. For EST data, clustering is important to group sequences originating from the same gene before the ESTs are assembled to reconstruct the original mRNA.Some clustering algorithms use single-linkage clustering, constructing a transitive closure of sequences with a similarity over a particular threshold. UCLUST and CD-HIT use a greedy algorithm that identifies a representative sequence for each cluster and assigns a new sequence to that cluster if it is sufficiently similar to the representative; if a sequence is not matched then it becomes the representative sequence for a new cluster. The similarity score is often based on sequence alignment. Sequence clustering is often used to make a non-redundant set of representative sequences.Sequence clusters are often synonymous with (but not identical to) protein families. Determining a representative tertiary structure for each sequence cluster is the aim of many structural genomics initiatives.".
- Sequence_clustering wikiPageID "468117".
- Sequence_clustering wikiPageLength "6418".
- Sequence_clustering wikiPageOutDegree "27".
- Sequence_clustering wikiPageRevisionID "682520209".
- Sequence_clustering wikiPageWikiLink Algorithm.
- Sequence_clustering wikiPageWikiLink Bioinformatics.
- Sequence_clustering wikiPageWikiLink Biomolecular_structure.
- Sequence_clustering wikiPageWikiLink Category:Bioinformatics.
- Sequence_clustering wikiPageWikiLink Cluster_analysis.
- Sequence_clustering wikiPageWikiLink Expressed_sequence_tag.
- Sequence_clustering wikiPageWikiLink Gene.
- Sequence_clustering wikiPageWikiLink Genomics.
- Sequence_clustering wikiPageWikiLink Greedy_algorithm.
- Sequence_clustering wikiPageWikiLink Homology_(biology).
- Sequence_clustering wikiPageWikiLink Messenger_RNA.
- Sequence_clustering wikiPageWikiLink Non_redundant_sequence.
- Sequence_clustering wikiPageWikiLink Protein.
- Sequence_clustering wikiPageWikiLink Protein_family.
- Sequence_clustering wikiPageWikiLink Representative_sequences.
- Sequence_clustering wikiPageWikiLink Sequence_alignment.
- Sequence_clustering wikiPageWikiLink Sequence_assembly.
- Sequence_clustering wikiPageWikiLink Single-linkage_clustering.
- Sequence_clustering wikiPageWikiLink Structural_genomics.
- Sequence_clustering wikiPageWikiLink Transcriptome.
- Sequence_clustering wikiPageWikiLink Transitive_closure.
- Sequence_clustering wikiPageWikiLink UCLUST.
- Sequence_clustering wikiPageWikiLink UniProt.
- Sequence_clustering wikiPageWikiLinkText "Sequence clustering".
- Sequence_clustering wikiPageWikiLinkText "ortholog groups".
- Sequence_clustering wikiPageWikiLinkText "sequence clustering".
- Sequence_clustering wikiPageUsesTemplate Template:Reflist.
- Sequence_clustering subject Category:Bioinformatics.
- Sequence_clustering type Biostatistic.
- Sequence_clustering comment "In bioinformatics, sequence clustering algorithms attempt to group biological sequences that are somehow related. The sequences can be either of genomic, \"transcriptomic\" (ESTs) or protein origin.For proteins, homologous sequences are typically grouped into families.".
- Sequence_clustering label "Sequence clustering".
- Sequence_clustering sameAs Q7452462.
- Sequence_clustering sameAs m.02d2__.
- Sequence_clustering sameAs Q7452462.
- Sequence_clustering wasDerivedFrom Sequence_clustering?oldid=682520209.
- Sequence_clustering isPrimaryTopicOf Sequence_clustering.