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- GeneMark abstract "GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a primary gene prediction tool for annotation of the first completely sequenced bacterial genome of Haemophilus influenzae, and in 1996 for the first archaeal genome of Methanococcus jannaschii. The algorithm introduced inhomogeneous three-periodic Markov chain models of protein-coding DNA sequence that became standard in gene prediction as well as Bayesian approach to gene prediction in two DNA strands simultaneously. Species specific parameters of the models were estimated from training sets of sequences of known type (protein-coding and non-coding). The major step of the algorithm computes for a given DNA fragment posterior probabilities of either being \"protein-coding\" (carrying genetic code) in each of six possible reading frames (including three frames in complementary DNA strand) or being \"non-coding\". Original GeneMark (developed before the HMM era in Bioinformatics) is an HMM-like algorithm; it can be viewed as approximation to known in the HMM theory posterior decoding algorithm for appropriately defined HMM.".
- GeneMark developer Georgia_Institute_of_Technology.
- GeneMark operatingSystem Linux.
- GeneMark operatingSystem Mac_OS.
- GeneMark operatingSystem Microsoft_Windows.
- GeneMark wikiPageExternalLink GeneMark_parallel_gene___Abstract.pdf.
- GeneMark wikiPageExternalLink 1107.full.
- GeneMark wikiPageExternalLink 3911.full.
- GeneMark wikiPageExternalLink 2607.full.
- GeneMark wikiPageExternalLink 7041.full.
- GeneMark wikiPageExternalLink 6494.full.
- GeneMark wikiPageExternalLink W451.full.
- GeneMark wikiPageExternalLink e132.full?sid=f4ddafac-da4f-4345-9a69-9430ab59aa37.
- GeneMark wikiPageExternalLink GeneMark.
- GeneMark wikiPageExternalLink GeneMark.
- GeneMark wikiPageExternalLink process.
- GeneMark wikiPageID "14771927".
- GeneMark wikiPageLength "8199".
- GeneMark wikiPageOutDegree "26".
- GeneMark wikiPageRevisionID "662249613".
- GeneMark wikiPageWikiLink Atlanta.
- GeneMark wikiPageWikiLink Binding_site.
- GeneMark wikiPageWikiLink Category:Bioinformatics_software.
- GeneMark wikiPageWikiLink Category:Genomics.
- GeneMark wikiPageWikiLink Category:Mathematical_and_theoretical_biology.
- GeneMark wikiPageWikiLink Category:Metagenomics_software.
- GeneMark wikiPageWikiLink Complementary_DNA.
- GeneMark wikiPageWikiLink Exon.
- GeneMark wikiPageWikiLink Gene_prediction.
- GeneMark wikiPageWikiLink Genetic_code.
- GeneMark wikiPageWikiLink Georgia_Institute_of_Technology.
- GeneMark wikiPageWikiLink Haemophilus_influenzae.
- GeneMark wikiPageWikiLink Hidden_Markov_model.
- GeneMark wikiPageWikiLink Homogeneity_and_heterogeneity.
- GeneMark wikiPageWikiLink Intergenic_region.
- GeneMark wikiPageWikiLink Intron.
- GeneMark wikiPageWikiLink Linux.
- GeneMark wikiPageWikiLink List_of_gene_prediction_software.
- GeneMark wikiPageWikiLink Mac_OS.
- GeneMark wikiPageWikiLink Markov_chain.
- GeneMark wikiPageWikiLink Methanocaldococcus_jannaschii.
- GeneMark wikiPageWikiLink Microsoft_Windows.
- GeneMark wikiPageWikiLink Nucleic_acid_sequence.
- GeneMark wikiPageWikiLink Ribosome.
- GeneMark wikiPageWikiLinkText "GeneMark".
- GeneMark author "Bioinformatics group of Mark Borodovsky".
- GeneMark developer Georgia_Institute_of_Technology.
- GeneMark license "Free for academic, non-profit or U.S. Government use".
- GeneMark name "GeneMark".
- GeneMark operatingSystem "Linux, Windows, and Mac OS".
- GeneMark released "1993".
- GeneMark title "GeneMark".
- GeneMark wikiPageUsesTemplate Template:Doi.
- GeneMark wikiPageUsesTemplate Template:Genomics-footer.
- GeneMark wikiPageUsesTemplate Template:Infobox_software.
- GeneMark wikiPageUsesTemplate Template:Official_website.
- GeneMark wikiPageUsesTemplate Template:Refbegin.
- GeneMark wikiPageUsesTemplate Template:Refend.
- GeneMark wikiPageUsesTemplate Template:URL.
- GeneMark subject Category:Bioinformatics_software.
- GeneMark subject Category:Genomics.
- GeneMark subject Category:Mathematical_and_theoretical_biology.
- GeneMark subject Category:Metagenomics_software.
- GeneMark hypernym Name.
- GeneMark type Software.
- GeneMark type Work.
- GeneMark type Genomic.
- GeneMark type Omic.
- GeneMark type CreativeWork.
- GeneMark type Thing.
- GeneMark type Q386724.
- GeneMark type Q7397.
- GeneMark comment "GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a primary gene prediction tool for annotation of the first completely sequenced bacterial genome of Haemophilus influenzae, and in 1996 for the first archaeal genome of Methanococcus jannaschii.".
- GeneMark label "GeneMark".
- GeneMark sameAs Q16335160.
- GeneMark sameAs m.03gxgqy.
- GeneMark sameAs Q16335160.
- GeneMark wasDerivedFrom GeneMark?oldid=662249613.
- GeneMark homepage GeneMark.
- GeneMark homepage GeneMark.
- GeneMark isPrimaryTopicOf GeneMark.
- GeneMark name "GeneMark".