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- Toeprinting_assay abstract "The toeprinting assay (originally called extension inhibition assay(1)) is method to look at the interaction of messenger RNA with ribosomes or other RNA-binding proteins. It is different from standard DNA footprinting assay. The toeprinting assay identifies only one edge of the complex on the RNA, whereas DNA footprinting identified both edges of the complex on the DNA. The toeprinting assay has been utilized to examine the formation of the translation initiation complex. The general idea is that you take an RNA of interest and mix it with the 30s subunit of the ribosome, initiator tRNA, a synthetic DNA primer that hybridizes downstream of the binding site, the four deoxynucleotide triphosphates, and reverse transcriptase (RT). RT will normally synthesize cDNA by extending the primer to the 5' end of the RNA. However, a bound ribosome will block RT from continuing, resulting in a shortened cDNA that is called a toeprint when observed on a sequencing gel. The precise nucleotide position of the toeprint on the RNA can be determined by running a DNA sequencing reaction generated with the same primer in adjacent lanes.1. Hartz, D., McPheeters, D.S., Traut, R. and Gold, L. 1988. Extension inhibition analysis of translation initiationcomplexes. Methods in Enzymology 164, 419-425.".
- Toeprinting_assay wikiPageID "34581395".
- Toeprinting_assay wikiPageLength "1612".
- Toeprinting_assay wikiPageOutDegree "10".
- Toeprinting_assay wikiPageRevisionID "589201942".
- Toeprinting_assay wikiPageWikiLink Category:Laboratory_techniques.
- Toeprinting_assay wikiPageWikiLink Category:Molecular_biology.
- Toeprinting_assay wikiPageWikiLink Category:Molecular_biology_techniques.
- Toeprinting_assay wikiPageWikiLink Complementary_DNA.
- Toeprinting_assay wikiPageWikiLink DNA_footprinting.
- Toeprinting_assay wikiPageWikiLink Messenger_RNA.
- Toeprinting_assay wikiPageWikiLink Primer_(molecular_biology).
- Toeprinting_assay wikiPageWikiLink RNA-binding_protein.
- Toeprinting_assay wikiPageWikiLink Reverse_transcriptase.
- Toeprinting_assay wikiPageWikiLink Ribosome.
- Toeprinting_assay wikiPageWikiLink Ribosomes.
- Toeprinting_assay wikiPageWikiLinkText "Toeprinting assay".
- Toeprinting_assay hasPhotoCollection Toeprinting_assay.
- Toeprinting_assay wikiPageUsesTemplate Template:Multiple_issues.
- Toeprinting_assay subject Category:Laboratory_techniques.
- Toeprinting_assay subject Category:Molecular_biology.
- Toeprinting_assay subject Category:Molecular_biology_techniques.
- Toeprinting_assay hypernym Method.
- Toeprinting_assay type Article.
- Toeprinting_assay type Software.
- Toeprinting_assay type Article.
- Toeprinting_assay type Laboratory.
- Toeprinting_assay type Technique.
- Toeprinting_assay comment "The toeprinting assay (originally called extension inhibition assay(1)) is method to look at the interaction of messenger RNA with ribosomes or other RNA-binding proteins. It is different from standard DNA footprinting assay. The toeprinting assay identifies only one edge of the complex on the RNA, whereas DNA footprinting identified both edges of the complex on the DNA. The toeprinting assay has been utilized to examine the formation of the translation initiation complex.".
- Toeprinting_assay label "Toeprinting assay".
- Toeprinting_assay sameAs m.0j279j0.
- Toeprinting_assay sameAs Q7812938.
- Toeprinting_assay sameAs Q7812938.
- Toeprinting_assay wasDerivedFrom Toeprinting_assay?oldid=589201942.
- Toeprinting_assay isPrimaryTopicOf Toeprinting_assay.