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- BamHI abstract "BamHI (from Bacillus amyloliquefaciens) is a type II restriction endonuclease, having the capacity for recognizing short sequences (6 b.p.) of DNA and specifically cleaving them at a target site. This exhibit focuses on the structure-function relations of BamHI as described by Newman, et al. (1995). BamHI binds at the recognition sequence 5'-GGATCC-3', and cleaves these sequences just after the 5'-guanine on each strand. This cleavage results in sticky ends which are 4 b.p. long. In its unbound form, BamHI displays a central b sheet, which resides in between a helices. BamHI is an extraordinarily unique molecule in that it undergoes a series of unconventional conformational changes upon DNA recognition. This allows the DNA to maintain its normal B-DNA conformation without distorting to facilitate enzyme binding. BamHI is a symmetric dimer. DNA is bound in a large cleft that is formed between dimers; the enzyme binds in a "crossover" manner. Each BamHI subunit makes the majority of its backbone contacts with the phosphates of a DNA half site but base pair contacts are made between each BamHI subunit and nitrogenous bases in the major groove of the opposite DNA half site. The protein binds the bases through either direct hydrogen bonds or water-mediated H-bonds between the protein and every H-bond donor/acceptor group in the major groove. Major groove contacts are formed by atoms residing on the amino-terminus of a parallel 4 helix bundle. This bundle marks the BamHI dimer interface, and it is thought that the dipole moments of the NH2-terminal atoms on this bundle may contribute to electrostatic stabilization.".
- BamHI symbol "BamHI".
- BamHI thumbnail PDB_1esg_EBI.jpg?width=300.
- BamHI wikiPageExternalLink ?Uniprot_accession=P23940.
- BamHI wikiPageID "10388309".
- BamHI wikiPageLength "4172".
- BamHI wikiPageOutDegree "19".
- BamHI wikiPageRevisionID "651059384".
- BamHI wikiPageWikiLink Alpha_helix.
- BamHI wikiPageWikiLink Bacillus_amyloliquefaciens.
- BamHI wikiPageWikiLink Beta_sheet.
- BamHI wikiPageWikiLink Bond_cleavage.
- BamHI wikiPageWikiLink Bond_dipole_moment.
- BamHI wikiPageWikiLink Category:Biotechnology.
- BamHI wikiPageWikiLink Category:Molecular_biology.
- BamHI wikiPageWikiLink Category:Restriction_enzymes.
- BamHI wikiPageWikiLink Conformational_change.
- BamHI wikiPageWikiLink DNA_profiling.
- BamHI wikiPageWikiLink DNA_recognition.
- BamHI wikiPageWikiLink Electrostatic_stabilization.
- BamHI wikiPageWikiLink Hydrogen_bond.
- BamHI wikiPageWikiLink Palindromic_sequence.
- BamHI wikiPageWikiLink Protein_Data_Bank.
- BamHI wikiPageWikiLink Protein_dimer.
- BamHI wikiPageWikiLink Recognition_sequence.
- BamHI wikiPageWikiLink Restriction_endonuclease.
- BamHI wikiPageWikiLink Restriction_enzyme.
- BamHI wikiPageWikiLink Restriction_site.
- BamHI wikiPageWikiLink Sticky_and_blunt_ends.
- BamHI wikiPageWikiLink Sticky_end.
- BamHI wikiPageWikiLinkText "''Bam''HI".
- BamHI wikiPageWikiLinkText "BamHI".
- BamHI caption "restriction endonuclease BamHI bound to a non-specific dna.".
- BamHI hasPhotoCollection BamHI.
- BamHI interpro "IPR004194".
- BamHI name "BamHI".
- BamHI pfam "PF02923".
- BamHI pfamClan "CL0236".
- BamHI scop "1".
- BamHI symbol "BamHI".
- BamHI wikiPageUsesTemplate Template:Infobox_protein_family.
- BamHI wikiPageUsesTemplate Template:InterPro_content.
- BamHI wikiPageUsesTemplate Template:MeshName.
- BamHI subject Category:Biotechnology.
- BamHI subject Category:Molecular_biology.
- BamHI subject Category:Restriction_enzymes.
- BamHI hypernym Endonuclease.
- BamHI type Biomolecule.
- BamHI type Protein.
- BamHI type Chemical.
- BamHI type Thing.
- BamHI type Q206229.
- BamHI type Q8054.
- BamHI comment "BamHI (from Bacillus amyloliquefaciens) is a type II restriction endonuclease, having the capacity for recognizing short sequences (6 b.p.) of DNA and specifically cleaving them at a target site. This exhibit focuses on the structure-function relations of BamHI as described by Newman, et al. (1995). BamHI binds at the recognition sequence 5'-GGATCC-3', and cleaves these sequences just after the 5'-guanine on each strand. This cleavage results in sticky ends which are 4 b.p. long.".
- BamHI label "BamHI".
- BamHI sameAs BamHI.
- BamHI sameAs BamHI.
- BamHI sameAs BamHI.
- BamHI sameAs BamHI.
- BamHI sameAs BamHI.
- BamHI sameAs m.02qb7cc.
- BamHI sameAs BamHI.
- BamHI sameAs Q409191.
- BamHI sameAs Q409191.
- BamHI wasDerivedFrom BamHI?oldid=651059384.
- BamHI depiction PDB_1esg_EBI.jpg.
- BamHI isPrimaryTopicOf BamHI.
