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- Q16335160 subject Q15274373.
- Q16335160 subject Q6938724.
- Q16335160 subject Q7029000.
- Q16335160 subject Q7065966.
- Q16335160 abstract "GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a primary gene prediction tool for annotation of the first completely sequenced bacterial genome of Haemophilus influenzae, and in 1996 for the first archaeal genome of Methanococcus jannaschii. The algorithm introduced inhomogeneous three-periodic Markov chain models of protein-coding DNA sequence that became standard in gene prediction as well as Bayesian approach to gene prediction in two DNA strands simultaneously. Species specific parameters of the models were estimated from training sets of sequences of known type (protein-coding and non-coding). The major step of the algorithm computes for a given DNA fragment posterior probabilities of either being "protein-coding" (carrying genetic code) in each of six possible reading frames (including three frames in complementary DNA strand) or being "non-coding". Original GeneMark (developed before the HMM era in Bioinformatics) is an HMM-like algorithm; it can be viewed as approximation to known in the HMM theory posterior decoding algorithm for appropriately defined HMM.".
- Q16335160 developer Q864855.
- Q16335160 operatingSystem Q1406.
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- Q16335160 operatingSystem Q43627.
- Q16335160 wikiPageExternalLink GeneMark_parallel_gene___Abstract.pdf.
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- Q16335160 wikiPageExternalLink GeneMark.
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- Q16335160 wikiPageWikiLink Q15274373.
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- Q16335160 wikiPageWikiLink Q7065966.
- Q16335160 wikiPageWikiLink Q863908.
- Q16335160 wikiPageWikiLink Q864855.
- Q16335160 developer Q864855.
- Q16335160 name "GeneMark".
- Q16335160 operatingSystem "Linux, Windows, and Mac OS".
- Q16335160 type CreativeWork.
- Q16335160 type Software.
- Q16335160 type Work.
- Q16335160 type Thing.
- Q16335160 type Q386724.
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- Q16335160 comment "GeneMark is a generic name for a family of ab initio gene prediction programs developed at the Georgia Institute of Technology in Atlanta. Developed in 1993, original GeneMark was used in 1995 as a primary gene prediction tool for annotation of the first completely sequenced bacterial genome of Haemophilus influenzae, and in 1996 for the first archaeal genome of Methanococcus jannaschii.".
- Q16335160 label "GeneMark".
- Q16335160 homepage GeneMark.
- Q16335160 homepage GeneMark.
- Q16335160 name "GeneMark".