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- TreeFam abstract "TreeFam (Tree families database) is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families.TreeFam defines a gene family as a group of genes that evolved after the speciation of single-metazoan animals. It also tries to include outgroup genes like yeast (S.cerevisiae and S. pombe) and plant (A. thaliana) to reveal these distant members.TreeFam is also an ortholog database. Unlike other pairwise alignment based ones, TreeFam infers orthologs by means of gene trees. It fits a gene tree into the universal species tree and finds historical duplications, speciations and losses events. TreeFam uses this information to evaluate tree building, guide manual curation, and infer complex ortholog and paralog relations.The basic elements of TreeFam are gene families that can be divided into two parts: TreeFam-A and TreeFam-B families. TreeFam-B families are automatically created. They might contain errors given complex phylogenies. TreeFam-A families are manually curated from TreeFam-B ones. Family names and node names are assigned at the same time. The ultimate goal of TreeFam is to present a curated resource for all the families.TreeFam is being run as a project at the Wellcome Trust Sanger Institute, and its software is housed on Sourceforge as \"TreeSoft\".".
- TreeFam thumbnail Database.png?width=300.
- TreeFam title "TreeFam".
- TreeFam wikiPageExternalLink treesoft.sourceforge.net.
- TreeFam wikiPageExternalLink www.treefam.org.
- TreeFam wikiPageID "4344507".
- TreeFam wikiPageLength "4157".
- TreeFam wikiPageOutDegree "31".
- TreeFam wikiPageRevisionID "692855989".
- TreeFam wikiPageWikiLink Animal.
- TreeFam wikiPageWikiLink Category:Biological_databases.
- TreeFam wikiPageWikiLink Category:Phylogenetics.
- TreeFam wikiPageWikiLink Collection_catalog.
- TreeFam wikiPageWikiLink Evolution.
- TreeFam wikiPageWikiLink Fabian_Schreiber.
- TreeFam wikiPageWikiLink Gene.
- TreeFam wikiPageWikiLink Gene_family.
- TreeFam wikiPageWikiLink HomoloGene.
- TreeFam wikiPageWikiLink Homology_(biology).
- TreeFam wikiPageWikiLink Inparanoid.
- TreeFam wikiPageWikiLink OrthoDB.
- TreeFam wikiPageWikiLink Orthologous_MAtrix.
- TreeFam wikiPageWikiLink Phylogenetic_tree.
- TreeFam wikiPageWikiLink Phylogenetics.
- TreeFam wikiPageWikiLink Plant.
- TreeFam wikiPageWikiLink SourceForge.
- TreeFam wikiPageWikiLink Species.
- TreeFam wikiPageWikiLink Wellcome_Trust_Sanger_Institute.
- TreeFam wikiPageWikiLink Yeast.
- TreeFam wikiPageWikiLink File:Database.png.
- TreeFam wikiPageWikiLinkText "TreeFam".
- TreeFam author Fabian_Schreiber.
- TreeFam center Wellcome_Trust_Sanger_Institute.
- TreeFam description "curated database of phylogenetic trees of animal gene families.".
- TreeFam logo File:Database.png.
- TreeFam pmid "Ruan J & al.".
- TreeFam title "TreeFam".
- TreeFam url www.treefam.org.
- TreeFam wikiPageUsesTemplate Template:Infobox_biodatabase.
- TreeFam wikiPageUsesTemplate Template:Reflist.
- TreeFam description "curated database of phylogenetic trees of animal gene families.".
- TreeFam subject Category:Biological_databases.
- TreeFam subject Category:Phylogenetics.
- TreeFam hypernym Database.
- TreeFam type BiologicalDatabase.
- TreeFam type Database.
- TreeFam type Work.
- TreeFam type Redirect.
- TreeFam type Subfield.
- TreeFam type CreativeWork.
- TreeFam type InformationObject.
- TreeFam type Thing.
- TreeFam type Q386724.
- TreeFam comment "TreeFam (Tree families database) is a database of phylogenetic trees of animal genes. It aims at developing a curated resource that gives reliable information about ortholog and paralog assignments, and evolutionary history of various gene families.TreeFam defines a gene family as a group of genes that evolved after the speciation of single-metazoan animals. It also tries to include outgroup genes like yeast (S.cerevisiae and S. pombe) and plant (A.".
- TreeFam label "TreeFam".
- TreeFam sameAs Q16335173.
- TreeFam sameAs m.0by6_3.
- TreeFam sameAs Q16335173.
- TreeFam wasDerivedFrom TreeFam?oldid=692855989.
- TreeFam depiction Database.png.
- TreeFam homepage www.treefam.org.
- TreeFam isPrimaryTopicOf TreeFam.