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- PhylomeDB abstract "PhylomeDB is a public biological database for complete catalogs of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees. The automated pipeline used to reconstruct trees aims at providing a high-quality phylogenetic analysis of different genomes, including Maximum Likelihood tree inference, alignment trimming and evolutionary model testing.PhylomeDB includes also a public download section with the complete set of trees, alignments and orthology predictions, as well as a web API that facilitates cross linking trees from external sources. Finally, phylomeDB provides an advanced tree visualization interface based on the ETE toolkit, which integrates tree topologies, taxonomic information, domain mapping and alignment visualization in a single and interactive tree image.".
- PhylomeDB thumbnail PhylomeDB_logo.png?width=300.
- PhylomeDB title "PhylomeDB".
- PhylomeDB wikiPageExternalLink index.html.
- PhylomeDB wikiPageExternalLink phylomedb.org.
- PhylomeDB wikiPageExternalLink questfororthologs.org.
- PhylomeDB wikiPageExternalLink www.crg.eu.
- PhylomeDB wikiPageExternalLink comparative-genomics.
- PhylomeDB wikiPageID "31542617".
- PhylomeDB wikiPageLength "7648".
- PhylomeDB wikiPageOutDegree "17".
- PhylomeDB wikiPageRevisionID "693708259".
- PhylomeDB wikiPageWikiLink Biological_database.
- PhylomeDB wikiPageWikiLink Category:Biological_databases.
- PhylomeDB wikiPageWikiLink Category:Phylogenetics.
- PhylomeDB wikiPageWikiLink FlyBase.
- PhylomeDB wikiPageWikiLink Genolevures.
- PhylomeDB wikiPageWikiLink Genomics.
- PhylomeDB wikiPageWikiLink Multiple_sequence_alignment.
- PhylomeDB wikiPageWikiLink OrthoXML.
- PhylomeDB wikiPageWikiLink Pfam.
- PhylomeDB wikiPageWikiLink Phylogenetic_tree.
- PhylomeDB wikiPageWikiLink Phylogenetics.
- PhylomeDB wikiPageWikiLink Phylogenomics.
- PhylomeDB wikiPageWikiLink Quest_for_Orthologs.
- PhylomeDB wikiPageWikiLink The_Arabidopsis_Information_Resource.
- PhylomeDB wikiPageWikiLink Category:Phylogenomics.
- PhylomeDB wikiPageWikiLink File:PhylomeDB_logo.png.
- PhylomeDB wikiPageWikiLinkText "PhylomeDB".
- PhylomeDB author "Salvador Capella-Gutierrez, Leszek Pryszcz, Marina Marcet-Houben, Ernst Thür, Laia Carreté, Miguel Ángel Naranjo-Ortiz and Toni Gabaldón".
- PhylomeDB description "genome-wide collections of gene phylogenies.".
- PhylomeDB laboratory "Comparative Genomics Group, Centre for Genomic Regulation , Barcelona, Spain.".
- PhylomeDB logo File:PhylomeDB_logo.png.
- PhylomeDB pmid "Huerta-Cepas et al.".
- PhylomeDB released "2014".
- PhylomeDB title "PhylomeDB".
- PhylomeDB url phylomedb.org.
- PhylomeDB wikiPageUsesTemplate Template:Biodatabase-stub.
- PhylomeDB wikiPageUsesTemplate Template:Infobox_biodatabase.
- PhylomeDB description "genome-wide collections of gene phylogenies.".
- PhylomeDB subject Category:Biological_databases.
- PhylomeDB subject Category:Phylogenetics.
- PhylomeDB subject Category:Phylogenomics.
- PhylomeDB hypernym Database.
- PhylomeDB type BiologicalDatabase.
- PhylomeDB type Database.
- PhylomeDB type Work.
- PhylomeDB type Subfield.
- PhylomeDB type CreativeWork.
- PhylomeDB type InformationObject.
- PhylomeDB type Thing.
- PhylomeDB type Q386724.
- PhylomeDB comment "PhylomeDB is a public biological database for complete catalogs of gene phylogenies (phylomes). It allows users to interactively explore the evolutionary history of genes through the visualization of phylogenetic trees and multiple sequence alignments. Moreover, phylomeDB provides genome-wide orthology and paralogy predictions which are based on the analysis of the phylogenetic trees.".
- PhylomeDB label "PhylomeDB".
- PhylomeDB sameAs Q7189443.
- PhylomeDB sameAs m.0glqkqt.
- PhylomeDB sameAs Q7189443.
- PhylomeDB wasDerivedFrom PhylomeDB?oldid=693708259.
- PhylomeDB depiction PhylomeDB_logo.png.
- PhylomeDB homepage phylomedb.org.
- PhylomeDB isPrimaryTopicOf PhylomeDB.