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- Orientations_of_Proteins_in_Membranes_database abstract "Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane protein structures with respect to the lipid bilayer. Positions of the proteins are calculated using an implicit solvation model of the lipid bilayer. The results of calculations were verified against experimental studies of spatial arrangement of transmembrane and peripheral proteins in membranes.Proteins structures are taken from the Protein Data Bank. OPM also provides structural classification of membrane-associated proteins into families and superfamilies, membrane topology, quaternary structure of proteins in membrane-bound state, and the type of a destination membrane for each protein. The coordinate files with calculated membrane boundaries are downloadable. The site allows visualization of protein structures with membrane boundary planes through Jmol, MDL Chime, WebMol and Discovery Studio.The database was widely used in experimental and theoretical studies of membrane-associated proteins. However, structures of many membrane-associated proteins are not included in the database if they can not be computationally predicted. This is the case when all membrane-anchoring parts of the proteins (amphiphilic alpha helices, exposed nonpolar residues, or lipidated amino acid residues) are missing in the experimental structures.".
- Orientations_of_Proteins_in_Membranes_database title "Orientations of Proteins in Membranes".
- Orientations_of_Proteins_in_Membranes_database wikiPageExternalLink opm.phar.umich.edu.
- Orientations_of_Proteins_in_Membranes_database wikiPageExternalLink download.php.
- Orientations_of_Proteins_in_Membranes_database wikiPageExternalLink server.php.
- Orientations_of_Proteins_in_Membranes_database wikiPageID "19332780".
- Orientations_of_Proteins_in_Membranes_database wikiPageLength "10652".
- Orientations_of_Proteins_in_Membranes_database wikiPageOutDegree "24".
- Orientations_of_Proteins_in_Membranes_database wikiPageRevisionID "688209499".
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Alpha_helix.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Amphiphile.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Biological_membrane.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Biomolecular_structure.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Category:Biological_databases.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Category:Membrane_proteins.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Discovery_Studio.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Implicit_solvation.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Jmol.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Lipid-anchored_protein.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Lipid_bilayer.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink MDL_Chime.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Membrane_protein.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Membrane_topology.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Peripheral_membrane_protein.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Protein.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Protein_Data_Bank.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Protein_Data_Bank_(file_format).
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Protein_structure.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink Transmembrane_protein.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLink University_of_Michigan_College_of_Pharmacy.
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLinkText "OPM".
- Orientations_of_Proteins_in_Membranes_database wikiPageWikiLinkText "Orientations of Proteins in Membranes database".
- Orientations_of_Proteins_in_Membranes_database center University_of_Michigan_College_of_Pharmacy.
- Orientations_of_Proteins_in_Membranes_database curation "Curated".
- Orientations_of_Proteins_in_Membranes_database description "The database provides spatial arrangement of proteins in the lipid bilayer".
- Orientations_of_Proteins_in_Membranes_database download download.php.
- Orientations_of_Proteins_in_Membranes_database format "modified PDB format".
- Orientations_of_Proteins_in_Membranes_database organism "All".
- Orientations_of_Proteins_in_Membranes_database pmid "PMID 16397007".
- Orientations_of_Proteins_in_Membranes_database released "2005".
- Orientations_of_Proteins_in_Membranes_database scope "Protein structures from the PDB".
- Orientations_of_Proteins_in_Membranes_database title "Orientations of Proteins in Membranes".
- Orientations_of_Proteins_in_Membranes_database url opm.phar.umich.edu.
- Orientations_of_Proteins_in_Membranes_database version "2".
- Orientations_of_Proteins_in_Membranes_database webapp server.php.
- Orientations_of_Proteins_in_Membranes_database wikiPageUsesTemplate Template:Infobox_biodatabase.
- Orientations_of_Proteins_in_Membranes_database wikiPageUsesTemplate Template:Reflist.
- Orientations_of_Proteins_in_Membranes_database description "The database provides spatial arrangement ofproteinsin thelipid bilayer".
- Orientations_of_Proteins_in_Membranes_database subject Category:Biological_databases.
- Orientations_of_Proteins_in_Membranes_database subject Category:Membrane_proteins.
- Orientations_of_Proteins_in_Membranes_database type BiologicalDatabase.
- Orientations_of_Proteins_in_Membranes_database type Database.
- Orientations_of_Proteins_in_Membranes_database type Work.
- Orientations_of_Proteins_in_Membranes_database type CreativeWork.
- Orientations_of_Proteins_in_Membranes_database type InformationObject.
- Orientations_of_Proteins_in_Membranes_database type Thing.
- Orientations_of_Proteins_in_Membranes_database type Q386724.
- Orientations_of_Proteins_in_Membranes_database comment "Orientations of Proteins in Membranes (OPM) database provides spatial positions of membrane protein structures with respect to the lipid bilayer. Positions of the proteins are calculated using an implicit solvation model of the lipid bilayer. The results of calculations were verified against experimental studies of spatial arrangement of transmembrane and peripheral proteins in membranes.Proteins structures are taken from the Protein Data Bank.".
- Orientations_of_Proteins_in_Membranes_database label "Orientations of Proteins in Membranes database".
- Orientations_of_Proteins_in_Membranes_database sameAs Q7102413.
- Orientations_of_Proteins_in_Membranes_database sameAs قاعدة_بيانات_توجهات_البروتينات_في_الأغشية.
- Orientations_of_Proteins_in_Membranes_database sameAs Orientations_of_Proteins_in_Membranes.
- Orientations_of_Proteins_in_Membranes_database sameAs m.02rw7r9.
- Orientations_of_Proteins_in_Membranes_database sameAs Baza_podataka_orijentacija_proteina_u_membranama.
- Orientations_of_Proteins_in_Membranes_database sameAs Baza_podataka_orijentacija_proteina_u_membranama.
- Orientations_of_Proteins_in_Membranes_database sameAs Q7102413.
- Orientations_of_Proteins_in_Membranes_database wasDerivedFrom Orientations_of_Proteins_in_Membranes_database?oldid=688209499.
- Orientations_of_Proteins_in_Membranes_database homepage opm.phar.umich.edu.
- Orientations_of_Proteins_in_Membranes_database isPrimaryTopicOf Orientations_of_Proteins_in_Membranes_database.