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- HomoloGene abstract "HomoloGene, a tool of the National Center for Biotechnology Information (NCBI), is a system for automated detection of homologs (similarity attributable to descent from a common ancestor) among the annotated genes of several completely sequenced eukaryotic genomes.The HomoloGene processing consists of the protein analysis from the input organisms. Sequences are compared using blastp[1], then matched up and put into groups, using a taxonomic tree built from sequence similarity, where closer related organisms are matched up first, and then further organisms are added to the tree. The protein alignments are mapped back to their corresponding DNA sequences, and then distance metrics as molecular distances Jukes and Cantor (1969), Ka/Ks ratio can be calculated. The sequences are matched up by using a heuristic algorithm for maximizing the score globally, rather than locally, in a bipartite matching (see complete bipartite graph). And then it calculates the statistical significance of each match. Cutoffs are made per position and Ks values are set to prevent false \"orthologs\" from being grouped together. “Paralogs” are identified by finding sequences that are closer within species than other species.".
- HomoloGene wikiPageExternalLink flybase.bio.indiana.edu.
- HomoloGene wikiPageExternalLink www.yeastgenome.org.
- HomoloGene wikiPageExternalLink harvester.kit.edu.
- HomoloGene wikiPageExternalLink rgd.mcw.edu.
- HomoloGene wikiPageExternalLink www.informatics.jax.org.
- HomoloGene wikiPageExternalLink COG.
- HomoloGene wikiPageExternalLink query.fcgi?db=OMIM.
- HomoloGene wikiPageExternalLink entrez?db=homologene.
- HomoloGene wikiPageExternalLink webdriver?MIval=aa-ZDB_home.apg.
- HomoloGene wikiPageID "3948246".
- HomoloGene wikiPageLength "3707".
- HomoloGene wikiPageOutDegree "46".
- HomoloGene wikiPageRevisionID "681286348".
- HomoloGene wikiPageWikiLink Animal.
- HomoloGene wikiPageWikiLink Anopheles_gambiae.
- HomoloGene wikiPageWikiLink Arabidopsis_thaliana.
- HomoloGene wikiPageWikiLink Bioinformatic_Harvester.
- HomoloGene wikiPageWikiLink Brown_rat.
- HomoloGene wikiPageWikiLink Caenorhabditis_elegans.
- HomoloGene wikiPageWikiLink Category:Bioinformatics.
- HomoloGene wikiPageWikiLink Category:Genetics.
- HomoloGene wikiPageWikiLink Cattle.
- HomoloGene wikiPageWikiLink Common_chimpanzee.
- HomoloGene wikiPageWikiLink Complete_bipartite_graph.
- HomoloGene wikiPageWikiLink Dicotyledon.
- HomoloGene wikiPageWikiLink Dog.
- HomoloGene wikiPageWikiLink Drosophila_melanogaster.
- HomoloGene wikiPageWikiLink Eremothecium_gossypii.
- HomoloGene wikiPageWikiLink FlyBase.
- HomoloGene wikiPageWikiLink Fungus.
- HomoloGene wikiPageWikiLink Heuristic_(computer_science).
- HomoloGene wikiPageWikiLink Homo_sapiens.
- HomoloGene wikiPageWikiLink Homology_(biology).
- HomoloGene wikiPageWikiLink House_mouse.
- HomoloGene wikiPageWikiLink Invertebrate.
- HomoloGene wikiPageWikiLink Ks_ratio.
- HomoloGene wikiPageWikiLink Kluyveromyces_lactis.
- HomoloGene wikiPageWikiLink Magnaporthe_grisea.
- HomoloGene wikiPageWikiLink Monocotyledon.
- HomoloGene wikiPageWikiLink Mouse_Genome_Informatics.
- HomoloGene wikiPageWikiLink National_Center_for_Biotechnology_Information.
- HomoloGene wikiPageWikiLink Neurospora_crassa.
- HomoloGene wikiPageWikiLink Online_Mendelian_Inheritance_in_Man.
- HomoloGene wikiPageWikiLink Oryza_sativa.
- HomoloGene wikiPageWikiLink Plant.
- HomoloGene wikiPageWikiLink Plasmodium_falciparum.
- HomoloGene wikiPageWikiLink Protist.
- HomoloGene wikiPageWikiLink Red_junglefowl.
- HomoloGene wikiPageWikiLink Saccharomyces_Genome_Database.
- HomoloGene wikiPageWikiLink Saccharomyces_cerevisiae.
- HomoloGene wikiPageWikiLink Schizosaccharomyces_pombe.
- HomoloGene wikiPageWikiLink Substitution_model.
- HomoloGene wikiPageWikiLink Vertebrate.
- HomoloGene wikiPageWikiLink Western_clawed_frog.
- HomoloGene wikiPageWikiLink Zebrafish.
- HomoloGene wikiPageWikiLink Zebrafish_Information_Network.
- HomoloGene wikiPageWikiLinkText "HomoloGene".
- HomoloGene wikiPageUsesTemplate Template:Multicol.
- HomoloGene wikiPageUsesTemplate Template:Multicol-break.
- HomoloGene wikiPageUsesTemplate Template:Multicol-end.
- HomoloGene wikiPageUsesTemplate Template:Unreferenced.
- HomoloGene subject Category:Bioinformatics.
- HomoloGene subject Category:Genetics.
- HomoloGene hypernym System.
- HomoloGene type Biostatistic.
- HomoloGene type Redirect.
- HomoloGene comment "HomoloGene, a tool of the National Center for Biotechnology Information (NCBI), is a system for automated detection of homologs (similarity attributable to descent from a common ancestor) among the annotated genes of several completely sequenced eukaryotic genomes.The HomoloGene processing consists of the protein analysis from the input organisms.".
- HomoloGene label "HomoloGene".
- HomoloGene sameAs Q468215.
- HomoloGene sameAs HomoloGene.
- HomoloGene sameAs HomoloGene.
- HomoloGene sameAs m.0b84hw.
- HomoloGene sameAs HomoloGene.
- HomoloGene sameAs HomoloGene.
- HomoloGene sameAs Q468215.
- HomoloGene wasDerivedFrom HomoloGene?oldid=681286348.
- HomoloGene isPrimaryTopicOf HomoloGene.