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- Discrete_optimized_protein_energy abstract "DOPE, or Discrete Optimized Protein Energy, is a statistical potential used to assess homology models in protein structure prediction. DOPE is based on an improved reference state that corresponds to noninteracting atoms in a homogeneous sphere with the radius dependent on a sample native structure; it thus accounts for the finite and spherical shape of the native structures. It is implemented in the popular homology modeling program MODELLER and used to assess the energy of the protein model generated through many iterations by MODELLER, which produces homology models by the satisfaction of spatial restraints. The models returning the minimum molpdfs can be chosen as best probable structures and can be further used for evaluating with the DOPE score. Like the current version of the MODELLER software, DOPE is implemented in Python and is run within the MODELLER environment. The DOPE method is generally used to assess the quality of a structure model as a whole. Alternatively, DOPE can also generate a residue-by-residue energy profile for the input model, making it possible for the user to spot the problematic region in the structure model.".
- Discrete_optimized_protein_energy wikiPageExternalLink modeller.
- Discrete_optimized_protein_energy wikiPageExternalLink manual.
- Discrete_optimized_protein_energy wikiPageID "6987160".
- Discrete_optimized_protein_energy wikiPageLength "1525".
- Discrete_optimized_protein_energy wikiPageOutDegree "6".
- Discrete_optimized_protein_energy wikiPageRevisionID "554212463".
- Discrete_optimized_protein_energy wikiPageWikiLink Category:Protein_structure.
- Discrete_optimized_protein_energy wikiPageWikiLink Homology_modeling.
- Discrete_optimized_protein_energy wikiPageWikiLink MODELLER.
- Discrete_optimized_protein_energy wikiPageWikiLink Protein_structure_prediction.
- Discrete_optimized_protein_energy wikiPageWikiLink Python_(programming_language).
- Discrete_optimized_protein_energy wikiPageWikiLink Statistical_potential.
- Discrete_optimized_protein_energy wikiPageWikiLinkText "Discrete optimized protein energy".
- Discrete_optimized_protein_energy wikiPageUsesTemplate Template:About.
- Discrete_optimized_protein_energy wikiPageUsesTemplate Template:Physics-stub.
- Discrete_optimized_protein_energy subject Category:Protein_structure.
- Discrete_optimized_protein_energy type Biophysic.
- Discrete_optimized_protein_energy type Physic.
- Discrete_optimized_protein_energy comment "DOPE, or Discrete Optimized Protein Energy, is a statistical potential used to assess homology models in protein structure prediction. DOPE is based on an improved reference state that corresponds to noninteracting atoms in a homogeneous sphere with the radius dependent on a sample native structure; it thus accounts for the finite and spherical shape of the native structures.".
- Discrete_optimized_protein_energy label "Discrete optimized protein energy".
- Discrete_optimized_protein_energy sameAs Q1109409.
- Discrete_optimized_protein_energy sameAs Discrete_optimized_protein_energy.
- Discrete_optimized_protein_energy sameAs m.0g_0_b.
- Discrete_optimized_protein_energy sameAs Q1109409.
- Discrete_optimized_protein_energy wasDerivedFrom Discrete_optimized_protein_energy?oldid=554212463.
- Discrete_optimized_protein_energy isPrimaryTopicOf Discrete_optimized_protein_energy.