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- CompuCell3D abstract "CompuCell3D is a three-dimensional C++ software problem solving environment for simulations of biocomplexity problems, integrating multiple mathematical [morphogenesis] models. These include the Cellular Potts Model (CPM) which can model cell clustering, growth, division, death, adhesion, and volume and surface area constraints; as well as partial differential equation solvers for modeling reaction-diffusion of external chemical fields and cell type automata for differentiation. By integrating these models CompuCell3D enables modeling of cellular reactions to external chemical fields such as secretion or resorption, and responses such as chemotaxis and haptotaxis.CompuCell3D is conducive for experimentation and testing biological models by providing a flexible and extensible package, with many different levels of control. High-level steering is possible through CompuCellPlayer, an interactive GUI built upon Qt threads which execute in parallel with the computational back end. Functionality such as zooming, rotation, playing and pausing simulations, setting colors and viewing cross sections is available through the player, with a sample screenshot shown below.Extending the back end is possible through an XML-based domain-specific language Biologo, which after lexical analysis and generation transparently converts to C++ extensions which can be compiled and dynamically loaded at runtime. The back end uses object-oriented design patterns which contribute to extensibility, reducing coupling between independently operating modules. Optional functionality can be encapsulated through plugins, which are dynamically loaded at runtime through an XML configuration file reference.CompuCell3D can model several different phenomena, including avian limb development, in vitro capillary development, adhesion-driven cell sorting, Dictyostelium discoideum, and fluid flows. The framework is accessible from the CompuCell3D Website".
- CompuCell3D wikiPageExternalLink www.compucell3d.org.
- CompuCell3D wikiPageID "5949647".
- CompuCell3D wikiPageLength "2154".
- CompuCell3D wikiPageOutDegree "13".
- CompuCell3D wikiPageRevisionID "567799531".
- CompuCell3D wikiPageWikiLink Category:Scientific_simulation_software.
- CompuCell3D wikiPageWikiLink Cellular_Potts_model.
- CompuCell3D wikiPageWikiLink Cellular_differentiation.
- CompuCell3D wikiPageWikiLink Chemotaxis.
- CompuCell3D wikiPageWikiLink Design_pattern.
- CompuCell3D wikiPageWikiLink Dictyostelium_discoideum.
- CompuCell3D wikiPageWikiLink Domain-specific_language.
- CompuCell3D wikiPageWikiLink Haptotaxis.
- CompuCell3D wikiPageWikiLink Problem_solving_environment.
- CompuCell3D wikiPageWikiLink Qt_(software).
- CompuCell3D wikiPageWikiLink Reaction–diffusion_system.
- CompuCell3D wikiPageWikiLink Resorption.
- CompuCell3D wikiPageWikiLink Secretion.
- CompuCell3D wikiPageWikiLinkText "CompuCell3D".
- CompuCell3D wikiPageUsesTemplate Template:Science-software-stub.
- CompuCell3D subject Category:Scientific_simulation_software.
- CompuCell3D hypernym Problem.
- CompuCell3D type Disease.
- CompuCell3D type Model.
- CompuCell3D type Model.
- CompuCell3D type Redirect.
- CompuCell3D comment "CompuCell3D is a three-dimensional C++ software problem solving environment for simulations of biocomplexity problems, integrating multiple mathematical [morphogenesis] models. These include the Cellular Potts Model (CPM) which can model cell clustering, growth, division, death, adhesion, and volume and surface area constraints; as well as partial differential equation solvers for modeling reaction-diffusion of external chemical fields and cell type automata for differentiation.".
- CompuCell3D label "CompuCell3D".
- CompuCell3D sameAs Q5157207.
- CompuCell3D sameAs m.0fg5yq.
- CompuCell3D sameAs Q5157207.
- CompuCell3D wasDerivedFrom CompuCell3D?oldid=567799531.
- CompuCell3D isPrimaryTopicOf CompuCell3D.