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- BamHI abstract "BamH I (from Bacillus amyloliquefaciens) is a type II restriction endonuclease, having the capacity for recognizing short sequences (6 b.p.) of DNA and specifically cleaving them at a target site. This exhibit focuses on the structure-function relations of BamH I as described by Newman, et al. (1995). BamH I binds at the recognition sequence 5'-GGATCC-3', and cleaves these sequences just after the 5'-guanine on each strand. This cleavage results in sticky ends which are 4 b.p. long. In its unbound form, BamH I displays a central b sheet, which resides in between a helices. BamH I is an extraordinarily unique molecule in that it undergoes a series of unconventional conformational changes upon DNA recognition. This allows the DNA to maintain its normal B-DNA conformation without distorting to facilitate enzyme binding. BamH I is a symmetric dimer. DNA is bound in a large cleft that is formed between dimers; the enzyme binds in a \"crossover\" manner. Each BamH I subunit makes the majority of its backbone contacts with the phosphates of a DNA half site but base pair contacts are made between each BamH I subunit and nitrogenous bases in the major groove of the opposite DNA half site. The protein binds the bases through either direct hydrogen bonds or water-mediated H-bonds between the protein and every H-bond donor/acceptor group in the major groove. Major groove contacts are formed by atoms residing on the amino-terminus of a parallel 4 helix bundle. This bundle marks the BamH I dimer interface, and it is thought that the dipole moments of the NH2-terminal atoms on this bundle may contribute to electrostatic stabilization.".
- BamHI symbol "BamH I".
- BamHI thumbnail PDB_1esg_EBI.jpg?width=300.
- BamHI wikiPageExternalLink ?Uniprot_accession=P23940.
- BamHI wikiPageID "10388309".
- BamHI wikiPageLength "4191".
- BamHI wikiPageOutDegree "19".
- BamHI wikiPageRevisionID "704454043".
- BamHI wikiPageWikiLink Alpha_helix.
- BamHI wikiPageWikiLink Bacillus_amyloliquefaciens.
- BamHI wikiPageWikiLink Beta_sheet.
- BamHI wikiPageWikiLink Bond_cleavage.
- BamHI wikiPageWikiLink Bond_dipole_moment.
- BamHI wikiPageWikiLink Category:Biotechnology.
- BamHI wikiPageWikiLink Category:Molecular_biology.
- BamHI wikiPageWikiLink Category:Restriction_enzymes.
- BamHI wikiPageWikiLink Conformational_change.
- BamHI wikiPageWikiLink DNA_profiling.
- BamHI wikiPageWikiLink Electrostatic_stabilization.
- BamHI wikiPageWikiLink Hydrogen_bond.
- BamHI wikiPageWikiLink Palindromic_sequence.
- BamHI wikiPageWikiLink Protein_Data_Bank.
- BamHI wikiPageWikiLink Protein_dimer.
- BamHI wikiPageWikiLink Recognition_sequence.
- BamHI wikiPageWikiLink Restriction_enzyme.
- BamHI wikiPageWikiLink Restriction_site.
- BamHI wikiPageWikiLink Sticky_and_blunt_ends.
- BamHI wikiPageWikiLinkText "''Bam''HI".
- BamHI wikiPageWikiLinkText "Bam".
- BamHI wikiPageWikiLinkText "BamHI".
- BamHI wikiPageWikiLinkText "HI".
- BamHI caption "restriction endonuclease BamH I bound to a non-specific dna.".
- BamHI interpro "IPR004194".
- BamHI name "BamH I".
- BamHI pfam "PF02923".
- BamHI pfamClan "CL0236".
- BamHI scop "1".
- BamHI symbol "BamH I".
- BamHI wikiPageUsesTemplate Template:Infobox_protein_family.
- BamHI wikiPageUsesTemplate Template:InterPro_content.
- BamHI wikiPageUsesTemplate Template:MeshName.
- BamHI subject Category:Biotechnology.
- BamHI subject Category:Molecular_biology.
- BamHI subject Category:Restriction_enzymes.
- BamHI hypernym Endonuclease.
- BamHI type Biomolecule.
- BamHI type Protein.
- BamHI type Chemical.
- BamHI type Thing.
- BamHI type Q206229.
- BamHI type Q8054.
- BamHI comment "BamH I (from Bacillus amyloliquefaciens) is a type II restriction endonuclease, having the capacity for recognizing short sequences (6 b.p.) of DNA and specifically cleaving them at a target site. This exhibit focuses on the structure-function relations of BamH I as described by Newman, et al. (1995). BamH I binds at the recognition sequence 5'-GGATCC-3', and cleaves these sequences just after the 5'-guanine on each strand. This cleavage results in sticky ends which are 4 b.p. long.".
- BamHI label "BamHI".
- BamHI sameAs Q409191.
- BamHI sameAs BamHI.
- BamHI sameAs BamHI.
- BamHI sameAs BamHI.
- BamHI sameAs BamHI.
- BamHI sameAs BamHI.
- BamHI sameAs m.02qb7cc.
- BamHI sameAs BamHI.
- BamHI sameAs Q409191.
- BamHI wasDerivedFrom BamHI?oldid=704454043.
- BamHI depiction PDB_1esg_EBI.jpg.
- BamHI isPrimaryTopicOf BamHI.