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- BRENDA_tissue_ontology abstract "The BTO (BRENDA Tissue Ontology) represents a comprehensive structured encylopedia. It provides terms, classifications, and definitions of tissues, organs, anatomical structures, plant parts, cell cultures, cell types, and cell lines of organisms from all taxonomic groups (animals, plants, fungis, protozoon) as enzyme sources. The information is connected to the functional data in the BRENDA („BRaunschweig ENzyme DAtabase“) enzyme information system.The BTO is one of the first tissue-specific ontologies in life sciences, not restricted to a specific organism or a specific organism group providing a user-friendly access to the wide range of tissue and cell-type information. Databases, such as Ontology Lookup Service or ses, such as MIRIAM Registry or of the EBI-EMBL, the TissueDistributionDB, including the Tissue Synonym Library of the German Cancer Research Center (DKFZ) in Heidelberg or the Bioportal plattform of the National Center for Biomedical Ontology (Stanford, USA) rely on the BTO and implement the encyclopedia as an essential repository of information into their respective plattform.The BTO enables users from medical research and pharmaceutical sciences to search for the occurrence and histological detection of disease-related enzymes in tissues, which play an important role in diagnosis, therapies, and drug development. In biochemistry and biotechnology the organism-specific tissue terms linked to enzyme functional data are an important resource for the understanding of the metabolism and regulation in life sciences. Ontologies represent classification systems that provide controlled and structured vocabularies. They are important tools to illustrate and to link evolutionary correlations.The development of the BTO started in 2003 with the aim to connect the biochemical and molecular biological enzyme data of BRENDA with a hierarchical and standardized collection of tissue-specific terms. The functional enzyme data and information in BRENDA have been manually annotated and structured by experts from biochemistry, biology, and chemistry. Presently (August 2014) the BTO contains 5,500 terms, linked to 4,000 synonyms and 4,500 definitions. The terms are classified under generic categories, rules, and formats of the Gene Ontology Consortium (GO,), organized as a directed acylic graph (DAG) and created using the open source OBO-Edit. All terms from each level are directly connected the enzyme data in BRENDA. The BTO is a suitable tool to distinguish between different enzymes which are expressed in a tissue-specific manner.".
- BRENDA_tissue_ontology thumbnail Database.png?width=300.
- BRENDA_tissue_ontology title "The BRENDA Tissue Ontology (BTO)".
- BRENDA_tissue_ontology wikiPageExternalLink BTO.
- BRENDA_tissue_ontology wikiPageExternalLink geneontology.org.
- BRENDA_tissue_ontology wikiPageExternalLink brenda.
- BRENDA_tissue_ontology wikiPageExternalLink www.brenda-enzymes.org.
- BRENDA_tissue_ontology wikiPageExternalLink ontology.php.
- BRENDA_tissue_ontology wikiPageExternalLink ontology.php?ontology_id=3.
- BRENDA_tissue_ontology wikiPageExternalLink browse.do?ontName=BTO.
- BRENDA_tissue_ontology wikiPageExternalLink index.php.
- BRENDA_tissue_ontology wikiPageExternalLink detail.cgi?id=brenda.
- BRENDA_tissue_ontology wikiPageID "30355579".
- BRENDA_tissue_ontology wikiPageLength "9071".
- BRENDA_tissue_ontology wikiPageOutDegree "34".
- BRENDA_tissue_ontology wikiPageRevisionID "638812581".
- BRENDA_tissue_ontology wikiPageWikiLink Animal.
- BRENDA_tissue_ontology wikiPageWikiLink BRENDA.
- BRENDA_tissue_ontology wikiPageWikiLink Biochemistry.
- BRENDA_tissue_ontology wikiPageWikiLink Biotechnology.
- BRENDA_tissue_ontology wikiPageWikiLink Category:Biochemistry.
- BRENDA_tissue_ontology wikiPageWikiLink Category:Biological_databases.
- BRENDA_tissue_ontology wikiPageWikiLink Category:Cell_culture.
- BRENDA_tissue_ontology wikiPageWikiLink Category:Developmental_biology.
- BRENDA_tissue_ontology wikiPageWikiLink Category:Enzymes.
- BRENDA_tissue_ontology wikiPageWikiLink Category:Ontology_(information_science).
- BRENDA_tissue_ontology wikiPageWikiLink Cell_culture.
- BRENDA_tissue_ontology wikiPageWikiLink Cell_type.
- BRENDA_tissue_ontology wikiPageWikiLink Deutsche_Sammlung_von_Mikroorganismen_und_Zellkulturen.
- BRENDA_tissue_ontology wikiPageWikiLink Diagnosis.
- BRENDA_tissue_ontology wikiPageWikiLink Drug_development.
- BRENDA_tissue_ontology wikiPageWikiLink Encyclopedia.
- BRENDA_tissue_ontology wikiPageWikiLink Enzyme.
- BRENDA_tissue_ontology wikiPageWikiLink European_Bioinformatics_Institute.
- BRENDA_tissue_ontology wikiPageWikiLink Fungus.
- BRENDA_tissue_ontology wikiPageWikiLink German_Cancer_Research_Center.
- BRENDA_tissue_ontology wikiPageWikiLink Histology.
- BRENDA_tissue_ontology wikiPageWikiLink List_of_life_sciences.
- BRENDA_tissue_ontology wikiPageWikiLink Medical_research.
- BRENDA_tissue_ontology wikiPageWikiLink Ontology.
- BRENDA_tissue_ontology wikiPageWikiLink Organ_(anatomy).
- BRENDA_tissue_ontology wikiPageWikiLink Pharmaceutical_sciences.
- BRENDA_tissue_ontology wikiPageWikiLink Plant.
- BRENDA_tissue_ontology wikiPageWikiLink Protozoa.
- BRENDA_tissue_ontology wikiPageWikiLink Tissue_(biology).
- BRENDA_tissue_ontology wikiPageWikiLink UniProt.
- BRENDA_tissue_ontology wikiPageWikiLink Websters_Dictionary.
- BRENDA_tissue_ontology wikiPageWikiLink File:Database.png.
- BRENDA_tissue_ontology wikiPageWikiLinkText "BRENDA tissue ontology".
- BRENDA_tissue_ontology description "ontology of all organisms for enzyme sources.".
- BRENDA_tissue_ontology logo File:Database.png.
- BRENDA_tissue_ontology pmid "PMID 21030441".
- BRENDA_tissue_ontology released "2003".
- BRENDA_tissue_ontology title "The BRENDA Tissue Ontology".
- BRENDA_tissue_ontology url ontology.php?ontology_id=3.
- BRENDA_tissue_ontology wikiPageUsesTemplate Template:Infobox_biodatabase.
- BRENDA_tissue_ontology description "ontology of all organisms forenzymesources.".
- BRENDA_tissue_ontology subject Category:Biochemistry.
- BRENDA_tissue_ontology subject Category:Biological_databases.
- BRENDA_tissue_ontology subject Category:Cell_culture.
- BRENDA_tissue_ontology subject Category:Developmental_biology.
- BRENDA_tissue_ontology subject Category:Enzymes.
- BRENDA_tissue_ontology subject Category:Ontology_(information_science).
- BRENDA_tissue_ontology type BiologicalDatabase.
- BRENDA_tissue_ontology type Database.
- BRENDA_tissue_ontology type Work.
- BRENDA_tissue_ontology type Organism.
- BRENDA_tissue_ontology type Organism.
- BRENDA_tissue_ontology type CreativeWork.
- BRENDA_tissue_ontology type InformationObject.
- BRENDA_tissue_ontology type Thing.
- BRENDA_tissue_ontology type Q386724.
- BRENDA_tissue_ontology comment "The BTO (BRENDA Tissue Ontology) represents a comprehensive structured encylopedia. It provides terms, classifications, and definitions of tissues, organs, anatomical structures, plant parts, cell cultures, cell types, and cell lines of organisms from all taxonomic groups (animals, plants, fungis, protozoon) as enzyme sources.".
- BRENDA_tissue_ontology label "BRENDA tissue ontology".
- BRENDA_tissue_ontology sameAs Q4836352.
- BRENDA_tissue_ontology sameAs BRENDA_Tissue_Ontology.
- BRENDA_tissue_ontology sameAs m.0g5t26h.
- BRENDA_tissue_ontology sameAs Q4836352.
- BRENDA_tissue_ontology wasDerivedFrom BRENDA_tissue_ontology?oldid=638812581.
- BRENDA_tissue_ontology depiction Database.png.
- BRENDA_tissue_ontology homepage ontology.php?ontology_id=3.
- BRENDA_tissue_ontology isPrimaryTopicOf BRENDA_tissue_ontology.