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- Sequence_Read_Archive abstract "The Sequence Read Archive (SRA, previously known as the Short Read Archive) is a bioinformatics database that provides a public repository for DNA sequencing data, especially the "short reads" generated by High-throughput sequencing, which are typically less than 1,000 base pairs in length. The archive is part of the International Nucleotide Sequence Database Collaboration (INSDC), and run as a collaboration between the NCBI, the European Bioinformatics Institute (EBI), and the DNA Data Bank of Japan (DDBJ).The archive was established by the National Center for Biotechnology Information (NCBI) in 2007 in order to provide a repository for data produced by RNA-Seq and ChIP-Seq studies as well as large-scale studies including the Human Microbiome Project and the 1000 Genomes Project. Originally called the Short Read Archive, the name was changed in anticipation of future sequencing technologies being able to produce longer sequence reads.The volume of data deposited in the Sequence Read Archive has grown rapidly. As of September 2010, 65% of the SRA was human genomic sequence, with another 16% relating to human metagenome sequence reads. Much of this data was deposited through the 1000 Genomes Project. In June 2011, the data contained within the SRA passed 100 Terabases of DNA in volume.The preferred data format for files submitted to the SRA is the BAM format, which is capable of storing both aligned and unaligned reads. Internally the SRA relies on the NCBI SRA Toolkit, used at all three INSDC member databases, to provide flexible data compression, API access and conversion to other formats such as FASTQ.NCBI announced their plan to close the NCBI SRA in February 2011 due to funding reduction. However, EBI and DDBJ announced that they would continue to support the SRA. In October 2011, NCBI announced continuation of funding for the SRA.Deposition of data in the SRA is mandated by most funding agencies and open access journals. Nature Publishing Group journals require that DNA and RNA sequencing data is made available through the SRA.".
- Sequence_Read_Archive thumbnail Database.png?width=300.
- Sequence_Read_Archive title "Sequence Read Archive".
- Sequence_Read_Archive wikiPageExternalLink index_e.shtml.
- Sequence_Read_Archive wikiPageExternalLink ena.
- Sequence_Read_Archive wikiPageExternalLink sra_submissions.
- Sequence_Read_Archive wikiPageExternalLink sra.
- Sequence_Read_Archive wikiPageExternalLink sra.
- Sequence_Read_Archive wikiPageID "31713909".
- Sequence_Read_Archive wikiPageLength "6898".
- Sequence_Read_Archive wikiPageOutDegree "28".
- Sequence_Read_Archive wikiPageRevisionID "647682193".
- Sequence_Read_Archive wikiPageWikiLink 1000_Genomes_Project.
- Sequence_Read_Archive wikiPageWikiLink Application_programming_interface.
- Sequence_Read_Archive wikiPageWikiLink BAM_format.
- Sequence_Read_Archive wikiPageWikiLink Base_pair.
- Sequence_Read_Archive wikiPageWikiLink Base_pairs.
- Sequence_Read_Archive wikiPageWikiLink Bioinformatics.
- Sequence_Read_Archive wikiPageWikiLink Category:Bioinformatics.
- Sequence_Read_Archive wikiPageWikiLink Category:Biological_databases.
- Sequence_Read_Archive wikiPageWikiLink ChIP-Seq.
- Sequence_Read_Archive wikiPageWikiLink ChIP-sequencing.
- Sequence_Read_Archive wikiPageWikiLink DNA_Data_Bank_of_Japan.
- Sequence_Read_Archive wikiPageWikiLink DNA_sequencing.
- Sequence_Read_Archive wikiPageWikiLink Data_compression.
- Sequence_Read_Archive wikiPageWikiLink Database.
- Sequence_Read_Archive wikiPageWikiLink European_Bioinformatics_Institute.
- Sequence_Read_Archive wikiPageWikiLink FASTQ_format.
- Sequence_Read_Archive wikiPageWikiLink File_format.
- Sequence_Read_Archive wikiPageWikiLink High-throughput_sequencing.
- Sequence_Read_Archive wikiPageWikiLink Human_Microbiome_Project.
- Sequence_Read_Archive wikiPageWikiLink Human_genome.
- Sequence_Read_Archive wikiPageWikiLink International_Nucleotide_Sequence_Database_Collaboration.
- Sequence_Read_Archive wikiPageWikiLink Metagenome.
- Sequence_Read_Archive wikiPageWikiLink Metagenomics.
- Sequence_Read_Archive wikiPageWikiLink National_Center_for_Biotechnology_Information.
- Sequence_Read_Archive wikiPageWikiLink Nature_Publishing_Group.
- Sequence_Read_Archive wikiPageWikiLink RNA-Seq.
- Sequence_Read_Archive wikiPageWikiLink SAMtools.
- Sequence_Read_Archive wikiPageWikiLink File:Database.png.
- Sequence_Read_Archive wikiPageWikiLink File:History_(and_predicted_future)_size_of_the_Sequence_Read_Archive.svg.
- Sequence_Read_Archive wikiPageWikiLinkText "SRA".
- Sequence_Read_Archive wikiPageWikiLinkText "Sequence Read Archive".
- Sequence_Read_Archive center European_Bioinformatics_Institute.
- Sequence_Read_Archive center National_Center_for_Biotechnology_Information.
- Sequence_Read_Archive description BAM_format.
- Sequence_Read_Archive description FASTQ_format.
- Sequence_Read_Archive description SAMtools.
- Sequence_Read_Archive hasPhotoCollection Sequence_Read_Archive.
- Sequence_Read_Archive logo File:Database.png.
- Sequence_Read_Archive organism "all".
- Sequence_Read_Archive title "Sequence Read Archive".
- Sequence_Read_Archive wikiPageUsesTemplate Template:Infobox_biodatabase.
- Sequence_Read_Archive wikiPageUsesTemplate Template:Reflist.
- Sequence_Read_Archive description "BAM data".
- Sequence_Read_Archive description "FASTQ Sequences".
- Sequence_Read_Archive subject Category:Bioinformatics.
- Sequence_Read_Archive subject Category:Biological_databases.
- Sequence_Read_Archive hypernym Database.
- Sequence_Read_Archive type BiologicalDatabase.
- Sequence_Read_Archive type Database.
- Sequence_Read_Archive type Work.
- Sequence_Read_Archive type Biostatistic.
- Sequence_Read_Archive type CreativeWork.
- Sequence_Read_Archive type InformationObject.
- Sequence_Read_Archive type Thing.
- Sequence_Read_Archive type Q386724.
- Sequence_Read_Archive comment "The Sequence Read Archive (SRA, previously known as the Short Read Archive) is a bioinformatics database that provides a public repository for DNA sequencing data, especially the "short reads" generated by High-throughput sequencing, which are typically less than 1,000 base pairs in length.".
- Sequence_Read_Archive label "Sequence Read Archive".
- Sequence_Read_Archive sameAs m.0gmcwqh.
- Sequence_Read_Archive sameAs Q7452459.
- Sequence_Read_Archive sameAs Q7452459.
- Sequence_Read_Archive wasDerivedFrom Sequence_Read_Archive?oldid=647682193.
- Sequence_Read_Archive depiction Database.png.
- Sequence_Read_Archive homepage ena.
- Sequence_Read_Archive homepage sra.
- Sequence_Read_Archive isPrimaryTopicOf Sequence_Read_Archive.