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- SAMtools abstract "SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA. Both simple and advanced tools are provided, supporting complex tasks like variant calling and alignment viewing as well as sorting, indexing, data extraction and format conversion. SAM files can be very large (10s of Gigabytes is common), so compression is used to save space. SAM files are human-readable text files, and BAM files are simply their binary equivalent, whilst CRAM files are a restructured column-oriented binary container format. BAM files are typically compressed and more efficient for software to work with than SAM. SAMtools makes it possible to work directly with a compressed BAM file, without having to uncompress the whole file. Additionally, since the format for a SAM/BAM file is somewhat complex - containing reads, references, alignments, quality information, and user-specified annotations - SAMtools reduces the effort needed to use SAM/BAM files by hiding low-level details.".
- SAMtools author Heng_Li.
- SAMtools language C_(programming_language).
- SAMtools latestReleaseDate "2015-02-02".
- SAMtools latestReleaseVersion "1.2".
- SAMtools status "Active".
- SAMtools wikiPageExternalLink SAMtools.
- SAMtools wikiPageExternalLink Samtools.pdf.
- SAMtools wikiPageExternalLink sam.pdf.
- SAMtools wikiPageExternalLink www.htslib.org.
- SAMtools wikiPageID "34328568".
- SAMtools wikiPageLength "9234".
- SAMtools wikiPageOutDegree "17".
- SAMtools wikiPageRevisionID "678229364".
- SAMtools wikiPageWikiLink C_(programming_language).
- SAMtools wikiPageWikiLink C_language.
- SAMtools wikiPageWikiLink Category:Bioinformatics_algorithms.
- SAMtools wikiPageWikiLink Category:Bioinformatics_software.
- SAMtools wikiPageWikiLink Category:DNA_sequencing.
- SAMtools wikiPageWikiLink Category:Public_domain_software.
- SAMtools wikiPageWikiLink Conveyor_belt.
- SAMtools wikiPageWikiLink DNA_sequencing.
- SAMtools wikiPageWikiLink Gigabyte.
- SAMtools wikiPageWikiLink Heng_Li.
- SAMtools wikiPageWikiLink List_of_sequence_alignment_software.
- SAMtools wikiPageWikiLink Pileup_format.
- SAMtools wikiPageWikiLink Standard_streams.
- SAMtools wikiPageWikiLink Stream_(computing).
- SAMtools wikiPageWikiLink Unix.
- SAMtools wikiPageWikiLinkText "SAM".
- SAMtools wikiPageWikiLinkText "SAMtools".
- SAMtools author Heng_Li.
- SAMtools description "utilities for post-processing alignments in the SAM format".
- SAMtools developer "John Marshall and Petr Danecek et al".
- SAMtools genre "Bioinformatics".
- SAMtools hasPhotoCollection SAMtools.
- SAMtools language C_(programming_language).
- SAMtools language C_language.
- SAMtools latestReleaseDate "2015-02-02".
- SAMtools latestReleaseVersion "1.2".
- SAMtools license "BSD, MIT".
- SAMtools operatingSystem "UNIX-based".
- SAMtools released "2009".
- SAMtools status "Active".
- SAMtools title "The Sequence Alignment/Map format and SAMtools.".
- SAMtools website www.htslib.org.
- SAMtools wikiPageUsesTemplate Template:Infobox_software.
- SAMtools wikiPageUsesTemplate Template:Mono.
- SAMtools wikiPageUsesTemplate Template:Reflist.
- SAMtools wikiPageUsesTemplate Template:Wikibooks.
- SAMtools subject Category:Bioinformatics_algorithms.
- SAMtools subject Category:Bioinformatics_software.
- SAMtools subject Category:DNA_sequencing.
- SAMtools subject Category:Public_domain_software.
- SAMtools hypernym Set.
- SAMtools type Article.
- SAMtools type Software.
- SAMtools type Work.
- SAMtools type Algorithm.
- SAMtools type Article.
- SAMtools type CreativeWork.
- SAMtools type Thing.
- SAMtools type Q386724.
- SAMtools type Q7397.
- SAMtools comment "SAMtools is a set of utilities for interacting with and post-processing short DNA sequence read alignments in the SAM, BAM and CRAM formats, written by Heng Li. These files are generated as output by short read aligners like BWA. Both simple and advanced tools are provided, supporting complex tasks like variant calling and alignment viewing as well as sorting, indexing, data extraction and format conversion.".
- SAMtools label "SAMtools".
- SAMtools sameAs SAMtools.
- SAMtools sameAs m.0hzq14h.
- SAMtools sameAs SAMtools.
- SAMtools sameAs Q7388648.
- SAMtools sameAs Q7388648.
- SAMtools wasDerivedFrom SAMtools?oldid=678229364.
- SAMtools homepage www.htslib.org.
- SAMtools isPrimaryTopicOf SAMtools.