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- ProtCID abstract "The Protein Common Interface Database (ProtCID) is a database of similar protein-protein interfaces in crystal structures of homologous proteins.Its main goal is to identify and cluster homodimeric and heterodimeric interfaces observed in multiple crystal forms of homologous proteins. Such interfaces, especially of non-identical proteins or protein complexes, have been associated with biologically relevant interactions.A common interface in ProtCID indicates chain-chain interactions that occur in different crystal forms. All protein sequences of known structure in the Protein Data Bank (PDB) are assigned a ”Pfam chain architecture”, which denotes the ordered Pfam assignments for that sequence, e.g. (Pkinase) or (Cyclin_N)_(Cyclin_C). Homodimeric interfaces in all crystals that contain a particular architecture are compared, regardless of whether there are other protein types in the crystals. All interfaces between two different Pfam architectures in all PDB entries that contain them are also compared (e.g., (Pkinase) and (Cyclin_N)_(Cyclin_C) ). For both homodimers and heterodimers, the interfaces are clustered into common interfaces based on a similarity score.ProtCID reports the number of crystal forms that contain a common interface, the number of PDB entries, the number of PDB and PISA biological assembly annotations that contain the same interface, the average surface area, and the minimum sequence identity of proteins that contain the interface. ProtCID provides an independent check on publicly available annotations of biological interactions for PDB entries.".
- ProtCID thumbnail Database.png?width=300.
- ProtCID title "ProtCID".
- ProtCID wikiPageExternalLink www.pdb.org.
- ProtCID wikiPageExternalLink protcid.
- ProtCID wikiPageExternalLink pisa.
- ProtCID wikiPageID "31720794".
- ProtCID wikiPageLength "7844".
- ProtCID wikiPageOutDegree "15".
- ProtCID wikiPageRevisionID "678223360".
- ProtCID wikiPageWikiLink Category:Bioinformatics.
- ProtCID wikiPageWikiLink Category:Biological_databases.
- ProtCID wikiPageWikiLink Category:Crystallography.
- ProtCID wikiPageWikiLink Category:Protein_structure.
- ProtCID wikiPageWikiLink Category:Systems_biology.
- ProtCID wikiPageWikiLink Fox_Chase_Cancer_Center.
- ProtCID wikiPageWikiLink Homology_(biology).
- ProtCID wikiPageWikiLink Pfam.
- ProtCID wikiPageWikiLink Protein-protein_interaction.
- ProtCID wikiPageWikiLink Protein_Data_Bank.
- ProtCID wikiPageWikiLink Protein_crystallography.
- ProtCID wikiPageWikiLink Protein_dimer.
- ProtCID wikiPageWikiLink Protein–protein_interaction.
- ProtCID wikiPageWikiLink Sequence_homology.
- ProtCID wikiPageWikiLink X-ray_crystallography.
- ProtCID wikiPageWikiLink File:Activation_of_ERBB_kinases.png.
- ProtCID wikiPageWikiLink File:Database.png.
- ProtCID wikiPageWikiLinkText "ProtCID".
- ProtCID author "Qifang Xu, Roland Dunbrack".
- ProtCID center Fox_Chase_Cancer_Center.
- ProtCID description "Similar interactions of homologous proteins in multiple crystal forms".
- ProtCID hasPhotoCollection ProtCID.
- ProtCID laboratory "Institute for Cancer Research".
- ProtCID logo File:Database.png.
- ProtCID pmid "Xu & Dunbrack".
- ProtCID released "2010".
- ProtCID title "ProtCID".
- ProtCID url protcid.
- ProtCID wikiPageUsesTemplate Template:Infobox_biodatabase.
- ProtCID wikiPageUsesTemplate Template:Reflist.
- ProtCID description "Similar interactions of homologous proteins in multiple crystal forms".
- ProtCID subject Category:Bioinformatics.
- ProtCID subject Category:Biological_databases.
- ProtCID subject Category:Crystallography.
- ProtCID subject Category:Protein_structure.
- ProtCID subject Category:Systems_biology.
- ProtCID hypernym Database.
- ProtCID type Article.
- ProtCID type BiologicalDatabase.
- ProtCID type Database.
- ProtCID type Work.
- ProtCID type Article.
- ProtCID type Biophysic.
- ProtCID type Biostatistic.
- ProtCID type Physic.
- ProtCID type CreativeWork.
- ProtCID type InformationObject.
- ProtCID type Thing.
- ProtCID type Q386724.
- ProtCID comment "The Protein Common Interface Database (ProtCID) is a database of similar protein-protein interfaces in crystal structures of homologous proteins.Its main goal is to identify and cluster homodimeric and heterodimeric interfaces observed in multiple crystal forms of homologous proteins.".
- ProtCID label "ProtCID".
- ProtCID sameAs m.0gmfmr8.
- ProtCID sameAs Q7251140.
- ProtCID sameAs Q7251140.
- ProtCID wasDerivedFrom ProtCID?oldid=678223360.
- ProtCID depiction Database.png.
- ProtCID homepage protcid.
- ProtCID isPrimaryTopicOf ProtCID.