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- Native_contact abstract "In protein folding, a native contact is a contact between the side chains of two amino acids that are not neighboring in the amino acid sequence (i.e., they are more than four residues apart in the primary sequence in order to remove trivial i to i+4 contacts along alpha helices) but are spatially close in the protein's native state tertiary structure. The fraction of native contacts reproduced in a particular structure is often used as a reaction coordinate for measuring the deviation from the native state of structures produced during molecular dynamics simulations or in benchmarks of protein structure prediction methods.The contact order is a measure of the locality of a protein's native contacts; that is, the sequence distance between amino acids that form contacts. Proteins with low contact order are thought to fold faster and some may be candidates for downhill folding.".
- Native_contact wikiPageID "6893752".
- Native_contact wikiPageLength "1078".
- Native_contact wikiPageOutDegree "12".
- Native_contact wikiPageRevisionID "665179033".
- Native_contact wikiPageWikiLink Amino_acid.
- Native_contact wikiPageWikiLink Biomolecular_structure.
- Native_contact wikiPageWikiLink Category:Protein_structure.
- Native_contact wikiPageWikiLink Contact_order.
- Native_contact wikiPageWikiLink Downhill_folding.
- Native_contact wikiPageWikiLink Molecular_dynamics.
- Native_contact wikiPageWikiLink Native_state.
- Native_contact wikiPageWikiLink Primary_structure.
- Native_contact wikiPageWikiLink Protein_folding.
- Native_contact wikiPageWikiLink Protein_structure_prediction.
- Native_contact wikiPageWikiLink Reaction_coordinate.
- Native_contact wikiPageWikiLink Side_chain.
- Native_contact wikiPageWikiLink Tertiary_structure.
- Native_contact wikiPageWikiLinkText "native contact".
- Native_contact wikiPageWikiLinkText "residue-residue contacts".
- Native_contact hasPhotoCollection Native_contact.
- Native_contact wikiPageUsesTemplate Template:Biochem-stub.
- Native_contact wikiPageUsesTemplate Template:Unreferenced.
- Native_contact subject Category:Protein_structure.
- Native_contact hypernym Contact.
- Native_contact type Article.
- Native_contact type Company.
- Native_contact type Article.
- Native_contact type Biophysic.
- Native_contact comment "In protein folding, a native contact is a contact between the side chains of two amino acids that are not neighboring in the amino acid sequence (i.e., they are more than four residues apart in the primary sequence in order to remove trivial i to i+4 contacts along alpha helices) but are spatially close in the protein's native state tertiary structure.".
- Native_contact label "Native contact".
- Native_contact sameAs m.0gvp9s.
- Native_contact sameAs Q16948403.
- Native_contact sameAs Q16948403.
- Native_contact wasDerivedFrom Native_contact?oldid=665179033.
- Native_contact isPrimaryTopicOf Native_contact.