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- Gaussian_network_model abstract "The Gaussian network model (GNM) is a representation of a biological macromolecule as an elastic mass-and-spring network to study, understand, and characterize mechanical aspects of its long-scale dynamics. The model has a wide range of applications from small proteins such as enzymes composed of a single domain, to large macromolecular assemblies such as a ribosome or a viral capsid. Protein domain dynamics plays key roles in a multitude of molecular recognition and cell signalling processes.Protein domains, connected by intrinsically disordered flexible linker domains, induce long-range allostery via protein domain dynamics.The resultant dynamic modes cannot be generally predicted from static structures of either the entire protein or individual domains. The Gaussian network model is a minimalist, coarse-grained approach to study biological molecules. In the model, proteins are represented by nodes corresponding to alpha carbons of the amino acid residues. Similarly, DNA and RNA structures are represented with one to three nodes for each nucleotide. The model uses the harmonic approximation to model interactions, i.e. the spatial interactions between nodes (amino acids or nucleotides) are modeled with a uniform harmonic spring. This coarse-grained representation makes the calculations computationally inexpensive.At molecular level, many biological phenomena, such as catalytic activity of an enzyme, occur within the range of nano- to millisecond timescales. All atom simulation techniques, such as molecular dynamics, rarely reach microsecond trajectory length, depending on the size of the system and accessible computational resources. Normal mode analysis in the context of GNM or elastic network (EN) models, in general, provides insights on the longer-scale functional behaviors of macromolecules. Here, the model captures native state functional motions of a biomolecule in the cost of atomic detail. The inference obtained from this model is complementary to atomic detail simulation techniques.Another model for protein dynamics based on elastic mass-and-spring networks is the Anisotropic Network Model.".
- Gaussian_network_model thumbnail MassSpringNetwork.jpg?width=300.
- Gaussian_network_model wikiPageExternalLink home.
- Gaussian_network_model wikiPageExternalLink hingeprot.html.
- Gaussian_network_model wikiPageExternalLink index.jsp.
- Gaussian_network_model wikiPageExternalLink enm.lobos.nih.gov.
- Gaussian_network_model wikiPageExternalLink anm.htm.
- Gaussian_network_model wikiPageExternalLink gnm.htm.
- Gaussian_network_model wikiPageExternalLink GNM_Online_Calculation.htm.
- Gaussian_network_model wikiPageExternalLink Index.htm.
- Gaussian_network_model wikiPageExternalLink omega.psi.iastate.edu.
- Gaussian_network_model wikiPageExternalLink anm.
- Gaussian_network_model wikiPageExternalLink elnemo.
- Gaussian_network_model wikiPageExternalLink www.molmovdb.org.
- Gaussian_network_model wikiPageExternalLink www.pdb.org.
- Gaussian_network_model wikiPageExternalLink dnabindprot.
- Gaussian_network_model wikiPageExternalLink ,.
- Gaussian_network_model wikiPageID "11210523".
- Gaussian_network_model wikiPageLength "25402".
- Gaussian_network_model wikiPageOutDegree "41".
- Gaussian_network_model wikiPageRevisionID "683130483".
- Gaussian_network_model wikiPageWikiLink Allosteric_regulation.
- Gaussian_network_model wikiPageWikiLink Allostery.
- Gaussian_network_model wikiPageWikiLink Anisotropic_Network_Model.
- Gaussian_network_model wikiPageWikiLink Capsid.
- Gaussian_network_model wikiPageWikiLink Category:Molecular_modelling.
- Gaussian_network_model wikiPageWikiLink Cell_cycle.
- Gaussian_network_model wikiPageWikiLink Cell_division_cycle.
- Gaussian_network_model wikiPageWikiLink Cell_signaling.
- Gaussian_network_model wikiPageWikiLink Cell_signalling.
- Gaussian_network_model wikiPageWikiLink Conformational_change.
- Gaussian_network_model wikiPageWikiLink Cryo-electron_microscopy.
- Gaussian_network_model wikiPageWikiLink Dynamics_(mechanics).
- Gaussian_network_model wikiPageWikiLink Enzyme.
- Gaussian_network_model wikiPageWikiLink File:EQFluct.jpg.
- Gaussian_network_model wikiPageWikiLink File:MassSpringNetwork.jpg.
- Gaussian_network_model wikiPageWikiLink File:SlowestMode.jpg.
- Gaussian_network_model wikiPageWikiLink Flexible_linker.
- Gaussian_network_model wikiPageWikiLink Harmonic_oscillator.
- Gaussian_network_model wikiPageWikiLink Hessian_matrix.
- Gaussian_network_model wikiPageWikiLink Hookes_law.
- Gaussian_network_model wikiPageWikiLink Intrinsically_disordered_proteins.
- Gaussian_network_model wikiPageWikiLink Kirchhoff_matrix.
- Gaussian_network_model wikiPageWikiLink Laplacian_matrix.
- Gaussian_network_model wikiPageWikiLink Macromolecular_Assembly.
- Gaussian_network_model wikiPageWikiLink Macromolecular_assembly.
- Gaussian_network_model wikiPageWikiLink Macromolecule.
- Gaussian_network_model wikiPageWikiLink Molecular_dynamics.
- Gaussian_network_model wikiPageWikiLink Molecular_replacement.
- Gaussian_network_model wikiPageWikiLink Normal_distribution.
- Gaussian_network_model wikiPageWikiLink Normal_mode.
- Gaussian_network_model wikiPageWikiLink Nucleotide.
- Gaussian_network_model wikiPageWikiLink Principal_component_analysis.
- Gaussian_network_model wikiPageWikiLink Protein_Data_Bank.
- Gaussian_network_model wikiPageWikiLink Protein_domain.
- Gaussian_network_model wikiPageWikiLink Protein_dynamics.
- Gaussian_network_model wikiPageWikiLink Ribosome.
- Gaussian_network_model wikiPageWikiLink Rubber_elasticity.
- Gaussian_network_model wikiPageWikiLink Spectral_theorem.
- Gaussian_network_model wikiPageWikiLink Spring_(device).
- Gaussian_network_model wikiPageWikiLink Statistical_mechanics.
- Gaussian_network_model wikiPageWikiLink X-ray_crystallography.
- Gaussian_network_model wikiPageWikiLink X-ray_structure.
- Gaussian_network_model wikiPageWikiLinkText "Gaussian network model".
- Gaussian_network_model hasPhotoCollection Gaussian_network_model.
- Gaussian_network_model wikiPageUsesTemplate Template:Refbegin.
- Gaussian_network_model wikiPageUsesTemplate Template:Refend.
- Gaussian_network_model wikiPageUsesTemplate Template:Reflist.
- Gaussian_network_model subject Category:Molecular_modelling.
- Gaussian_network_model hypernym Representation.
- Gaussian_network_model type Physic.
- Gaussian_network_model comment "The Gaussian network model (GNM) is a representation of a biological macromolecule as an elastic mass-and-spring network to study, understand, and characterize mechanical aspects of its long-scale dynamics. The model has a wide range of applications from small proteins such as enzymes composed of a single domain, to large macromolecular assemblies such as a ribosome or a viral capsid.".
- Gaussian_network_model label "Gaussian network model".
- Gaussian_network_model sameAs Gaußsche_Vektoren.
- Gaussian_network_model sameAs m.02r3snv.
- Gaussian_network_model sameAs Q263400.
- Gaussian_network_model sameAs Q263400.
- Gaussian_network_model sameAs 高斯网络模型.
- Gaussian_network_model wasDerivedFrom Gaussian_network_model?oldid=683130483.
- Gaussian_network_model depiction MassSpringNetwork.jpg.
- Gaussian_network_model isPrimaryTopicOf Gaussian_network_model.