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- RefDB_(chemistry) abstract "The Re-referenced Protein Chemical shift Database (RefDB) is a NMR spectroscopy database of carefully corrected or re-referenced chemical shifts, derived from the BioMagResBank (BMRB) (Fig. 1). The database was assembled by using a structure-based chemical shift calculation program (called SHIFTX) to calculate expected protein (1)H, (13)C and (15)N chemical shifts from X-ray or NMR coordinate data of previously assigned proteins reported in the BMRB. The comparison is automatically performed by a program called SHIFTCOR. The RefDB database currently provides reference-corrected chemical shift data on more than 2000 assigned peptides and proteins. Data from the database indicates that nearly 25% of BMRB entries with (13)C protein assignments and 27% of BMRB entries with (15)N protein assignments require significant chemical shift reference readjustments. Additionally, nearly 40% of protein entries deposited in the BioMagResBank appear to have at least one assignment error. Users may download, search or browse the database through a number of methods available through the RefDB website. RefDB provides a standard chemical shift resource for biomolecular NMR spectroscopists, wishing to derive or compute chemical shift trends in peptides and proteins.".
- RefDB_(chemistry) thumbnail RefDB_logo.png?width=300.
- RefDB_(chemistry) wikiPageExternalLink refdb.wishartlab.com.
- RefDB_(chemistry) wikiPageExternalLink refdb.wishartlab.com.
- RefDB_(chemistry) wikiPageID "34138058".
- RefDB_(chemistry) wikiPageLength "6396".
- RefDB_(chemistry) wikiPageOutDegree "45".
- RefDB_(chemistry) wikiPageRevisionID "671718114".
- RefDB_(chemistry) wikiPageWikiLink BLAST.
- RefDB_(chemistry) wikiPageWikiLink Backbone_chain.
- RefDB_(chemistry) wikiPageWikiLink Category:Chemical_databases.
- RefDB_(chemistry) wikiPageWikiLink Category:Chemistry_software.
- RefDB_(chemistry) wikiPageWikiLink Category:Nuclear_magnetic_resonance_software.
- RefDB_(chemistry) wikiPageWikiLink Category:Protein_methods.
- RefDB_(chemistry) wikiPageWikiLink Chemical_Shift.
- RefDB_(chemistry) wikiPageWikiLink Chemical_shift.
- RefDB_(chemistry) wikiPageWikiLink Chemical_shift_index.
- RefDB_(chemistry) wikiPageWikiLink GenBank.
- RefDB_(chemistry) wikiPageWikiLink NMR.
- RefDB_(chemistry) wikiPageWikiLink NMR_spectroscopy.
- RefDB_(chemistry) wikiPageWikiLink Nuclear_magnetic_resonance.
- RefDB_(chemistry) wikiPageWikiLink Nuclear_magnetic_resonance_spectroscopy.
- RefDB_(chemistry) wikiPageWikiLink Nuclear_magnetic_resonance_spectroscopy_of_proteins.
- RefDB_(chemistry) wikiPageWikiLink Peptide.
- RefDB_(chemistry) wikiPageWikiLink Protein.
- RefDB_(chemistry) wikiPageWikiLink Protein_Chemical_Shift_Prediction.
- RefDB_(chemistry) wikiPageWikiLink Protein_Chemical_Shift_Re-Referencing.
- RefDB_(chemistry) wikiPageWikiLink Protein_Data_Bank.
- RefDB_(chemistry) wikiPageWikiLink Protein_NMR.
- RefDB_(chemistry) wikiPageWikiLink Protein_chemical_shift_prediction.
- RefDB_(chemistry) wikiPageWikiLink Protein_chemical_shift_re-referencing.
- RefDB_(chemistry) wikiPageWikiLink Protein_secondary_structure.
- RefDB_(chemistry) wikiPageWikiLink Protein_structure_database.
- RefDB_(chemistry) wikiPageWikiLink SHIFTCOR.
- RefDB_(chemistry) wikiPageWikiLink X-ray.
- RefDB_(chemistry) wikiPageWikiLink File:RefDB_fig1.png.
- RefDB_(chemistry) wikiPageWikiLink File:RefDB_home.png.
- RefDB_(chemistry) wikiPageWikiLink File:RefDB_logo.png.
- RefDB_(chemistry) wikiPageWikiLinkText "RefDB (chemistry)".
- RefDB_(chemistry) wikiPageWikiLinkText "RefDB".
- RefDB_(chemistry) center "University of Alberta".
- RefDB_(chemistry) curation "Automatically curated".
- RefDB_(chemistry) description "Chemical Shift database".
- RefDB_(chemistry) download refdb.wishartlab.com.
- RefDB_(chemistry) frequency "Weekly with periodic corrections and updates".
- RefDB_(chemistry) hasPhotoCollection RefDB_(chemistry).
- RefDB_(chemistry) laboratory "Dr. David Wishart".
- RefDB_(chemistry) logo "150".
- RefDB_(chemistry) pmid "RefDB: A database of uniformly referenced protein chemical shifts.".
- RefDB_(chemistry) scope "Re-referenced protein and polypeptide chemical shift assignments".
- RefDB_(chemistry) url refdb.wishartlab.com.
- RefDB_(chemistry) wikiPageUsesTemplate Template:Cite_journal.
- RefDB_(chemistry) wikiPageUsesTemplate Template:Infobox_biodatabase.
- RefDB_(chemistry) wikiPageUsesTemplate Template:Reflist.
- RefDB_(chemistry) description "Chemical Shift database".
- RefDB_(chemistry) subject Category:Chemical_databases.
- RefDB_(chemistry) subject Category:Chemistry_software.
- RefDB_(chemistry) subject Category:Nuclear_magnetic_resonance_software.
- RefDB_(chemistry) subject Category:Protein_methods.
- RefDB_(chemistry) hypernym Database.
- RefDB_(chemistry) type BiologicalDatabase.
- RefDB_(chemistry) type Database.
- RefDB_(chemistry) type Work.
- RefDB_(chemistry) type CreativeWork.
- RefDB_(chemistry) type InformationObject.
- RefDB_(chemistry) type Thing.
- RefDB_(chemistry) type Q386724.
- RefDB_(chemistry) comment "The Re-referenced Protein Chemical shift Database (RefDB) is a NMR spectroscopy database of carefully corrected or re-referenced chemical shifts, derived from the BioMagResBank (BMRB) (Fig. 1). The database was assembled by using a structure-based chemical shift calculation program (called SHIFTX) to calculate expected protein (1)H, (13)C and (15)N chemical shifts from X-ray or NMR coordinate data of previously assigned proteins reported in the BMRB.".
- RefDB_(chemistry) label "RefDB (chemistry)".
- RefDB_(chemistry) sameAs m.0hrcgnd.
- RefDB_(chemistry) sameAs Q17077868.
- RefDB_(chemistry) sameAs Q17077868.
- RefDB_(chemistry) wasDerivedFrom RefDB_(chemistry)?oldid=671718114.
- RefDB_(chemistry) depiction RefDB_logo.png.
- RefDB_(chemistry) homepage refdb.wishartlab.com.
- RefDB_(chemistry) isPrimaryTopicOf RefDB_(chemistry).